{
    "type": "genome",
    "identifier": "GCA_017987825.1",
    "organism": "Sphingorhabdus sp.",
    "title": "Sphingorhabdus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017987825.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18119726",
        "wgs_master": "JAGNSY000000000.1",
        "refseq_category": "na",
        "taxid": "1902408",
        "species_taxid": "1902408",
        "organism_name": "Sphingorhabdus sp.",
        "infraspecific_name": "",
        "isolate": "Go_SlAct_bin_163",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/15",
        "asm_name": "ASM1798782v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/987/825/GCA_017987825.1_ASM1798782v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-15",
    "dateModified": "2021-04-15",
    "datePublished": "2021-04-15",
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        "sample_organism": [
            "Sphingorhabdus sp."
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        "sample_taxid": [
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        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
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        "sample_host_location_id": [],
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            "max": null
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        "sample_temperature_range": {
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            "max": null
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        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
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}