{ "type": "genome", "identifier": "GCA_017993135.1", "organism": "Brachymonas sp.", "title": "Brachymonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_017993135.1", "bioproject": "PRJNA524094", "biosample": "SAMN18120097", "wgs_master": "JAGONG000000000.1", "refseq_category": "na", "taxid": "1936292", "species_taxid": "1936292", "organism_name": "Brachymonas sp.", "infraspecific_name": "", "isolate": "Go_SlPrim_bin_119", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/15", "asm_name": "ASM1799313v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/993/135/GCA_017993135.1_ASM1799313v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-15", "dateModified": "2021-04-15", "datePublished": "2021-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Brachymonas sp." ], "sample_taxid": [ "1936292" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Goettingen" ], "sample_host_location_id": [], "data_size": "0.490 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.02, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1755889", "Number of Sequences": "89", "Longest Sequences (bp)": "97893", "N50 (bp)": "29252", "Gap Ratio (%)": "0.381573", "GCcontent (%)": "55.8", "Number of CDSs": "1422", "Average Protein Length": "320.1", "Coding Ratio (%)": "77.8", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serpentinimonas barnesii", "strain": "strain=H1", "accession": "GCA_000696225.1", "taxid": 1458427, "species_taxid": 1458427, "relation_to_type": "type", "validated": true, "ani": 76.9343, "matched_fragments": 93, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serpentinimonas maccroryi", "strain": "strain=B1", "accession": "GCA_000828915.1", "taxid": 1458426, "species_taxid": 1458426, "relation_to_type": "type", "validated": true, "ani": 76.8212, "matched_fragments": 87, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachymonas chironomi", "strain": "strain=DSM 19884", "accession": "GCA_000374625.1", "taxid": 491919, "species_taxid": 491919, "relation_to_type": "type", "validated": true, "ani": 76.8157, "matched_fragments": 99, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=NBRC 13960", "accession": "GCA_003568725.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 76.7566, "matched_fragments": 128, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=DSM 1837", "accession": "GCA_004341365.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 76.7372, "matched_fragments": 128, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachymonas denitrificans", "strain": "strain=DSM 15123", "accession": "GCA_900110225.1", "taxid": 28220, "species_taxid": 28220, "relation_to_type": "type", "validated": true, "ani": 76.6641, "matched_fragments": 121, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira hankyongi", "strain": "strain=NY-02", "accession": "GCA_003570885.1", "taxid": 2315688, "species_taxid": 2315688, "relation_to_type": "type", "validated": true, "ani": 76.6391, "matched_fragments": 82, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax antarcticus", "strain": "strain=DSM 24876", "accession": "GCA_001955735.1", "taxid": 81479, "species_taxid": 81479, "relation_to_type": "type", "validated": true, "ani": 76.6117, "matched_fragments": 80, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, 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"ani": 76.4188, "matched_fragments": 103, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax temperans", "strain": "strain=DSM 7270", "accession": "GCA_006716905.1", "taxid": 80878, "species_taxid": 80878, "relation_to_type": "type", "validated": true, "ani": 76.4114, "matched_fragments": 108, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 76.3864, "matched_fragments": 92, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans curvus", "strain": "strain=MWH-C5", "accession": "GCA_003063475.1", "taxid": 323423, "species_taxid": 323423, "relation_to_type": "type", "validated": true, "ani": 76.3519, "matched_fragments": 89, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas terrigena", "strain": "strain=NCTC1937", "accession": "GCA_900461435.1", "taxid": 32013, "species_taxid": 32013, "relation_to_type": "type", "validated": true, "ani": 76.3325, "matched_fragments": 65, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 76.2912, "matched_fragments": 94, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira suum", "strain": "strain=SC1-8", "accession": "GCA_003008595.1", "taxid": 2109915, "species_taxid": 2109915, "relation_to_type": "type", "validated": true, "ani": 76.25, "matched_fragments": 79, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 76.1831, "matched_fragments": 89, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verminephrobacter eiseniae", "strain": "strain=EF01-2", "accession": "GCA_000015565.1", "taxid": 364317, "species_taxid": 364317, "relation_to_type": "type", "validated": true, "ani": 75.9957, "matched_fragments": 84, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas suwonensis", "strain": "strain=EJ-4", "accession": "GCA_012844455.2", "taxid": 2606214, "species_taxid": 2606214, "relation_to_type": "type", "validated": true, "ani": 75.9865, "matched_fragments": 77, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax aquaticus", "strain": "strain=Gr-4", "accession": "GCA_006974105.1", "taxid": 2527691, "species_taxid": 2527691, "relation_to_type": "type", "validated": true, "ani": 75.9428, "matched_fragments": 75, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas avium", "strain": "strain=Sa2CVA6", "accession": "GCA_014836675.1", "taxid": 2762231, "species_taxid": 2762231, "relation_to_type": "type", "validated": true, "ani": 75.8826, "matched_fragments": 74, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga borbori", "strain": "strain=LA-38", "accession": "GCA_003417535.1", "taxid": 2294117, "species_taxid": 2294117, "relation_to_type": "type", "validated": true, "ani": 75.8798, "matched_fragments": 84, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.02, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017993135.1", 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