{
    "type": "genome",
    "identifier": "GCA_017993265.1",
    "organism": "Lactococcus sp.",
    "title": "Lactococcus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017993265.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18120106",
        "wgs_master": "JAGONA000000000.1",
        "refseq_category": "na",
        "taxid": "44273",
        "species_taxid": "44273",
        "organism_name": "Lactococcus sp.",
        "infraspecific_name": "",
        "isolate": "Go_SlPrim_bin_166",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/15",
        "asm_name": "ASM1799326v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/993/265/GCA_017993265.1_ASM1799326v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-15",
    "dateModified": "2021-04-15",
    "datePublished": "2021-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactococcus sp."
        ],
        "sample_taxid": [
            "44273"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Goettingen"
        ],
        "sample_host_location_id": [],
        "data_size": "0.293 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 66.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1015995",
        "Number of Sequences": "92",
        "Longest Sequences (bp)": "53902",
        "N50 (bp)": "14756",
        "Gap Ratio (%)": "0.059055",
        "GCcontent (%)": "41.0",
        "Number of CDSs": "929",
        "Average Protein Length": "290.1",
        "Coding Ratio (%)": "79.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lactococcus raffinolactis",
                "strain": "strain=NBRC 100932",
                "accession": "GCA_001591765.1",
                "taxid": 1366,
                "species_taxid": 1366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.0583,
                "matched_fragments": 273,
                "total_fragments": 285,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus raffinolactis",
                "strain": "strain=ATCC 43920",
                "accession": "GCA_002441745.1",
                "taxid": 1366,
                "species_taxid": 1366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.0076,
                "matched_fragments": 275,
                "total_fragments": 285,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus laudensis",
                "strain": "strain=LMG 28353",
                "accession": "GCA_019586025.1",
                "taxid": 1494461,
                "species_taxid": 1494461,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.3035,
                "matched_fragments": 251,
                "total_fragments": 285,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus laudensis",
                "strain": "strain=DSM 28961",
                "accession": "GCA_013449735.1",
                "taxid": 1494461,
                "species_taxid": 1494461,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2579,
                "matched_fragments": 249,
                "total_fragments": 285,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus chungangensis",
                "strain": "strain=DSM 22330",
                "accession": "GCA_900119835.1",
                "taxid": 451457,
                "species_taxid": 451457,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8671,
                "matched_fragments": 242,
                "total_fragments": 285,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus reticulitermitis",
                "strain": "strain=Rs-Y01",
                "accession": "GCA_002260845.1",
                "taxid": 2025039,
                "species_taxid": 2025039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4258,
                "matched_fragments": 236,
                "total_fragments": 285,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 66.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001591765.1",
                "gtdb_species": "s__Lactococcus_A raffinolactis",
                "ani": 99.0583,
                "matched_fragments": 273,
                "total_fragments": 285,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "98.57",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 14,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013449735.1",
                "gtdb_species": "s__Lactococcus_A laudensis",
                "ani": 88.2579,
                "matched_fragments": 249,
                "total_fragments": 285,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002441885.1",
                "gtdb_species": "s__Lactococcus_A chungangensis",
                "ani": 85.9335,
                "matched_fragments": 244,
                "total_fragments": 285,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002260845.1",
                "gtdb_species": "s__Lactococcus_A reticulitermitis",
                "ani": 85.4258,
                "matched_fragments": 236,
                "total_fragments": 285,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002441695.1",
                "gtdb_species": "s__Lactococcus_A piscium",
                "ani": 79.6545,
                "matched_fragments": 140,
                "total_fragments": 285,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011170065.1",
                "gtdb_species": "s__Lactococcus_A insecticola",
                "ani": 79.6,
                "matched_fragments": 107,
                "total_fragments": 285,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011170085.1",
                "gtdb_species": "s__Lactococcus_A hodotermopsidis",
                "ani": 78.8214,
                "matched_fragments": 113,
                "total_fragments": 285,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": -0.302,
        "doubling_h": -0.114,
        "growth_tmp": 31.261,
        "optimum_tmp": 30.902,
        "optimum_ph": 5.9,
        "genome_size": 2225783.826,
        "gc_content": 37.699,
        "coding_genes": 2184.408,
        "rRNA16S_genes": 4.75,
        "tRNA_genes": 58.609,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.7,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.3,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.857,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.142,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Streptococcaceae",
        "g__Lactococcus_A",
        "s__Lactococcus_A raffinolactis"
    ],
    "_genome_taxon": [
        "Lactococcus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Streptococcaceae",
        "g__Lactococcus_A",
        "s__Lactococcus_A raffinolactis",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Streptococcaceae",
        "Lactococcus",
        "A",
        "Lactococcus",
        "A",
        "raffinolactis"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}