{
    "type": "genome",
    "identifier": "GCA_017993295.1",
    "organism": "Ferruginibacter sp.",
    "title": "Ferruginibacter sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017993295.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18120288",
        "wgs_master": "JAGOMZ000000000.1",
        "refseq_category": "na",
        "taxid": "1940288",
        "species_taxid": "1940288",
        "organism_name": "Ferruginibacter sp.",
        "infraspecific_name": "",
        "isolate": "Gw_Eff_bin_216",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/15",
        "asm_name": "ASM1799329v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/993/295/GCA_017993295.1_ASM1799329v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-15",
    "dateModified": "2021-04-15",
    "datePublished": "2021-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ferruginibacter sp."
        ],
        "sample_taxid": [
            "1940288"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Greifswald"
        ],
        "sample_host_location_id": [],
        "data_size": "0.803 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2865888",
        "Number of Sequences": "94",
        "Longest Sequences (bp)": "258269",
        "N50 (bp)": "49929",
        "Gap Ratio (%)": "0.027915",
        "GCcontent (%)": "38.2",
        "Number of CDSs": "2372",
        "Average Protein Length": "344.1",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ferruginibacter albus",
                "strain": "strain=KIS38-8",
                "accession": "GCA_020042285.1",
                "taxid": 2875540,
                "species_taxid": 2875540,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1478,
                "matched_fragments": 89,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ginsengibacter hankyongi",
                "strain": "strain=BR5-29",
                "accession": "GCA_008710285.1",
                "taxid": 2607284,
                "species_taxid": 2607284,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9924,
                "matched_fragments": 74,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrotalea flava",
                "strain": "strain=CCUG 51397",
                "accession": "GCA_001623405.1",
                "taxid": 714549,
                "species_taxid": 714549,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.7482,
                "matched_fragments": 59,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrotalea lipotrueae",
                "strain": "strain=TMF_100",
                "accession": "GCA_019249625.1",
                "taxid": 2803817,
                "species_taxid": 2803817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6741,
                "matched_fragments": 68,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niabella hibiscisoli",
                "strain": "strain=THG-DN5.5",
                "accession": "GCA_022512515.1",
                "taxid": 1825928,
                "species_taxid": 1825928,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6668,
                "matched_fragments": 52,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrotalea sandarakina",
                "strain": "strain=DSM 23241",
                "accession": "GCA_003254115.1",
                "taxid": 1004304,
                "species_taxid": 1004304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5857,
                "matched_fragments": 50,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnovirga soli",
                "strain": "strain=KCS-6",
                "accession": "GCA_013106755.1",
                "taxid": 2656915,
                "species_taxid": 2656915,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5818,
                "matched_fragments": 80,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hanamia caeni",
                "strain": "strain=BO-59",
                "accession": "GCA_003721595.1",
                "taxid": 2294116,
                "species_taxid": 2294116,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3679,
                "matched_fragments": 54,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016699815.1",
                "gtdb_species": "s__Ferruginibacter sp002381005",
                "ani": 99.9084,
                "matched_fragments": 909,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.14",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 20,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018266715.1",
                "gtdb_species": "s__Ferruginibacter sp018266715",
                "ani": 80.8254,
                "matched_fragments": 501,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "99.51",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016710595.1",
                "gtdb_species": "s__Ferruginibacter sp016710595",
                "ani": 77.0334,
                "matched_fragments": 224,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001898465.1",
                "gtdb_species": "s__Ferruginibacter sp001898465",
                "ani": 76.9691,
                "matched_fragments": 197,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002352045.1",
                "gtdb_species": "s__Ferruginibacter sp002352045",
                "ani": 76.7685,
                "matched_fragments": 199,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.67",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018268155.1",
                "gtdb_species": "s__Ferruginibacter sp018268155",
                "ani": 76.7263,
                "matched_fragments": 182,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013141115.1",
                "gtdb_species": "s__Ferruginibacter sp013141115",
                "ani": 76.673,
                "matched_fragments": 152,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017983695.1",
                "gtdb_species": "s__Ferruginibacter sp017983695",
                "ani": 76.4982,
                "matched_fragments": 180,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014379905.1",
                "gtdb_species": "s__Ferruginibacter sp014379905",
                "ani": 76.3864,
                "matched_fragments": 141,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018268135.1",
                "gtdb_species": "s__Ferruginibacter sp018268135",
                "ani": 76.3422,
                "matched_fragments": 173,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016713965.1",
                "gtdb_species": "s__Ferruginibacter sp016713965",
                "ani": 76.2689,
                "matched_fragments": 107,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016715365.1",
                "gtdb_species": "s__Ferruginibacter sp016715365",
                "ani": 76.1641,
                "matched_fragments": 129,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.54",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.238,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Chitinophagales",
        "f__Chitinophagaceae",
        "g__Ferruginibacter",
        "s__Ferruginibacter sp002381005"
    ],
    "_genome_taxon": [
        "Ferruginibacter",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Chitinophagales",
        "f__Chitinophagaceae",
        "g__Ferruginibacter",
        "s__Ferruginibacter sp002381005",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Chitinophagales",
        "Chitinophagaceae",
        "Ferruginibacter",
        "Ferruginibacter",
        "sp002381005"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}