{ "type": "genome", "identifier": "GCA_018001535.1", "organism": "Bifidobacterium sp.", "title": "Bifidobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018001535.1", "bioproject": "PRJNA524094", "biosample": "SAMN18119157", "wgs_master": "JAGNHX000000000.1", "refseq_category": "na", "taxid": "41200", "species_taxid": "41200", "organism_name": "Bifidobacterium sp.", "infraspecific_name": "", "isolate": "Go_UH_bin_230", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/16", "asm_name": "ASM1800153v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/001/535/GCA_018001535.1_ASM1800153v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-16", "dateModified": "2021-04-16", "datePublished": "2021-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium sp." ], "sample_taxid": [ "41200" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Goettingen" ], "sample_host_location_id": [], "data_size": "0.243 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 42.71, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "860329", "Number of Sequences": "92", "Longest Sequences (bp)": "59301", "N50 (bp)": "12528", "Gap Ratio (%)": "0.127858", "GCcontent (%)": "61.2", "Number of CDSs": "575", "Average Protein Length": "364.2", "Coding Ratio (%)": "73.0", "Number of rRNAs": "1", "Number of tRNAs": "31", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium adolescentis", "strain": "strain=NCTC11814", "accession": "GCA_900445615.1", "taxid": 1680, "species_taxid": 1680, "relation_to_type": "type", "validated": true, "ani": 98.8476, "matched_fragments": 219, "total_fragments": 234, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium adolescentis", "strain": "strain=ATCC 15703", "accession": "GCA_000010425.1", "taxid": 1680, "species_taxid": 1680, "relation_to_type": "type", "validated": true, "ani": 98.8327, "matched_fragments": 219, "total_fragments": 234, "ani_threshold": 95, "status": "conclusive" 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catenulatum subsp. kashiwanohense", "strain": "strain=DSM 21854", "accession": "GCA_000741605.1", "taxid": 630129, "species_taxid": 1686, "relation_to_type": "type", "validated": true, "ani": 84.2311, "matched_fragments": 187, "total_fragments": 234, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium moukalabense", "strain": "strain=DSM 27321", "accession": "GCA_000522505.1", "taxid": 1333651, "species_taxid": 1333651, "relation_to_type": "type", "validated": true, "ani": 83.6138, "matched_fragments": 194, "total_fragments": 234, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 42.71, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000010425.1", "gtdb_species": "s__Bifidobacterium adolescentis", "ani": 98.8327, "matched_fragments": 219, "total_fragments": 234, "gtdb_taxonomy": 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