{
    "type": "genome",
    "identifier": "GCA_018001795.1",
    "organism": "Prevotella sp.",
    "title": "Prevotella sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018001795.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18119151",
        "wgs_master": "JAGNHH000000000.1",
        "refseq_category": "na",
        "taxid": "59823",
        "species_taxid": "59823",
        "organism_name": "Prevotella sp.",
        "infraspecific_name": "",
        "isolate": "Go_UH_bin_19",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/16",
        "asm_name": "ASM1800179v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/001/795/GCA_018001795.1_ASM1800179v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-16",
    "dateModified": "2021-04-16",
    "datePublished": "2021-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Prevotella sp."
        ],
        "sample_taxid": [
            "59823"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Goettingen"
        ],
        "sample_host_location_id": [],
        "data_size": "0.435 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 16.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1507123",
        "Number of Sequences": "104",
        "Longest Sequences (bp)": "45520",
        "N50 (bp)": "20255",
        "Gap Ratio (%)": "0.072987",
        "GCcontent (%)": "51.1",
        "Number of CDSs": "1116",
        "Average Protein Length": "363.7",
        "Coding Ratio (%)": "80.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Prevotella dentalis",
                "strain": "strain=DSM 3688",
                "accession": "GCA_000242335.3",
                "taxid": 52227,
                "species_taxid": 52227,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0193,
                "matched_fragments": 125,
                "total_fragments": 452,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella dentalis",
                "strain": "strain=DSM 3688",
                "accession": "GCA_000220215.1",
                "taxid": 52227,
                "species_taxid": 52227,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8581,
                "matched_fragments": 132,
                "total_fragments": 452,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hallella seregens",
                "strain": "strain=ATCC 51272",
                "accession": "GCA_000518545.1",
                "taxid": 52229,
                "species_taxid": 52229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7928,
                "matched_fragments": 126,
                "total_fragments": 452,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hallella faecis",
                "strain": "strain=CLA-AA-H145",
                "accession": "GCA_018789675.1",
                "taxid": 2841596,
                "species_taxid": 2841596,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4699,
                "matched_fragments": 104,
                "total_fragments": 452,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella buccae",
                "strain": "strain=ATCC 33574",
                "accession": "GCA_000184945.1",
                "taxid": 28126,
                "species_taxid": 28126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0185,
                "matched_fragments": 71,
                "total_fragments": 452,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella mizrahii",
                "strain": "strain=LKV-178-WT-2A",
                "accession": "GCA_009695775.1",
                "taxid": 2606637,
                "species_taxid": 2606637,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7949,
                "matched_fragments": 78,
                "total_fragments": 452,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 16.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002305235.1",
                "gtdb_species": "s__Prevotella sp002305235",
                "ani": 77.8852,
                "matched_fragments": 101,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000518545.1",
                "gtdb_species": "s__Prevotella seregens",
                "ani": 77.8199,
                "matched_fragments": 125,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.68",
                "min_intra_species_ani": "98.64",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016901395.1",
                "gtdb_species": "s__Prevotella sp016901395",
                "ani": 77.7769,
                "matched_fragments": 133,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002317385.1",
                "gtdb_species": "s__Prevotella sp002317385",
                "ani": 77.7103,
                "matched_fragments": 126,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018789675.1",
                "gtdb_species": "s__Prevotella sp002300055",
                "ani": 77.4998,
                "matched_fragments": 103,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "99.02",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900762125.1",
                "gtdb_species": "s__Prevotella sp900762125",
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                "matched_fragments": 68,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002481295.1",
                "gtdb_species": "s__Prevotella sp002481295",
                "ani": 77.2889,
                "matched_fragments": 81,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.83",
                "min_intra_species_ani": "96.70",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900315835.1",
                "gtdb_species": "s__Prevotella sp900315835",
                "ani": 77.2135,
                "matched_fragments": 90,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.59",
                "min_intra_species_ani": "98.19",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_000184945.1",
                "gtdb_species": "s__Prevotella buccae",
                "ani": 77.137,
                "matched_fragments": 67,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "98.38",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900543585.1",
                "gtdb_species": "s__Prevotella sp900543585",
                "ani": 76.9333,
                "matched_fragments": 62,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "97.73",
                "min_intra_species_ani": "96.00",
                "mean_intra_species_af": "0.84",
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            },
            {
                "accession": "GCA_902792635.1",
                "gtdb_species": "s__Prevotella sp902792635",
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                "matched_fragments": 66,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.72",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_900317685.1",
                "gtdb_species": "s__Prevotella sp900317685",
                "ani": 76.5366,
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                "mean_intra_species_ani": "97.13",
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                "num_clustered_genomes": 12,
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            },
            {
                "accession": "GCA_900540375.1",
                "gtdb_species": "s__Prevotella sp900540375",
                "ani": 76.4793,
                "matched_fragments": 86,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "98.83",
                "min_intra_species_ani": "98.80",
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                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
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            {
                "accession": "GCA_905198745.1",
                "gtdb_species": "s__Prevotella sp905198745",
                "ani": 76.0622,
                "matched_fragments": 50,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": 0.114,
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        "coding_genes": 2508.172,
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        "bacillus_cell_shape": 0.975,
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    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
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    ],
    "_genome_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
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        "f__Bacteroidaceae",
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        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Prevotella",
        "Prevotella",
        "sp023425865"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}