{ "type": "genome", "identifier": "GCA_018002995.1", "organism": "Acinetobacter sp.", "title": "Acinetobacter sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018002995.1", "bioproject": "PRJNA524094", "biosample": "SAMN18119172", "wgs_master": "JAGNEY000000000.1", "refseq_category": "na", "taxid": "472", "species_taxid": "472", "organism_name": "Acinetobacter sp.", "infraspecific_name": "", "isolate": "Go_UH_bin_86", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/16", "asm_name": "ASM1800299v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/002/995/GCA_018002995.1_ASM1800299v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-16", "dateModified": "2021-04-16", "datePublished": "2021-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter sp." ], "sample_taxid": [ "472" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Goettingen" ], "sample_host_location_id": [], "data_size": "0.203 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 16.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "695817", "Number of Sequences": "145", "Longest Sequences (bp)": "16927", "N50 (bp)": "4879", "Gap Ratio (%)": "0.071858", "GCcontent (%)": "43.0", "Number of CDSs": "556", "Average Protein Length": "284.2", "Coding Ratio (%)": "68.1", "Number of rRNAs": "0", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter parvus", "strain": "strain=CIP 108168", "accession": "GCA_000368025.1", "taxid": 134533, "species_taxid": 134533, "relation_to_type": "type", "validated": true, "ani": 97.9497, "matched_fragments": 162, "total_fragments": 167, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter parvus", "strain": "strain=DSM 16617", "accession": "GCA_000248155.2", "taxid": 134533, "species_taxid": 134533, "relation_to_type": "type", "validated": true, "ani": 97.9205, "matched_fragments": 160, "total_fragments": 167, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter vivianii", "strain": "strain=CCM 8642", "accession": "GCA_014635885.1", "taxid": 1776742, "species_taxid": 1776742, "relation_to_type": "type", "validated": true, "ani": 83.3842, "matched_fragments": 136, "total_fragments": 167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter courvalinii", "strain": "strain=CCM 8635", "accession": "GCA_014635545.1", "taxid": 280147, "species_taxid": 280147, "relation_to_type": "type", "validated": true, "ani": 83.141, "matched_fragments": 138, "total_fragments": 167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter courvalinii", "strain": "strain=CCUG 67960", "accession": "GCA_008802255.1", "taxid": 280147, "species_taxid": 280147, "relation_to_type": "type", "validated": true, "ani": 83.1373, "matched_fragments": 139, "total_fragments": 167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tjernbergiae", "strain": "strain=CIP 107465", "accession": "GCA_000488175.1", "taxid": 202955, "species_taxid": 202955, "relation_to_type": "type", "validated": true, "ani": 83.087, "matched_fragments": 134, "total_fragments": 167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter colistiniresistens", "strain": "strain=NIPH 2036", "accession": "GCA_000413935.1", "taxid": 280145, "species_taxid": 280145, "relation_to_type": "type", "validated": true, "ani": 82.7019, "matched_fragments": 141, "total_fragments": 167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=CIP 64.5", "accession": "GCA_000368765.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 82.6853, "matched_fragments": 126, "total_fragments": 167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 82.6265, "matched_fragments": 127, "total_fragments": 167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=MTCC 11365", "accession": "GCA_000414075.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 82.5914, "matched_fragments": 140, "total_fragments": 167, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 16.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368025.1", "gtdb_species": "s__Acinetobacter parvus", "ani": 97.9497, "matched_fragments": 162, "total_fragments": 167, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "96.79", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 11, "status": "conclusive" }, { "accession": "GCF_002165255.2", "gtdb_species": "s__Acinetobacter sp002165255", "ani": 85.1839, "matched_fragments": 144, "total_fragments": 167, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.92", "min_intra_species_ani": "96.70", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_014636095.1", "gtdb_species": "s__Acinetobacter modestus", "ani": 84.2994, "matched_fragments": 138, "total_fragments": 167, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "96.94", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_014635885.1", "gtdb_species": "s__Acinetobacter vivianii", "ani": 83.3842, "matched_fragments": 136, "total_fragments": 167, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "96.89", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000400715.1", "gtdb_species": "s__Acinetobacter sp000400715", "ani": 83.3824, "matched_fragments": 137, "total_fragments": 167, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009884975.1", "gtdb_species": "s__Acinetobacter dispersus", "ani": 83.3047, "matched_fragments": 138, "total_fragments": 167, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.44", "min_intra_species_ani": "95.54", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014635545.1", "gtdb_species": "s__Acinetobacter courvalinii", "ani": 83.141, "matched_fragments": 138, "total_fragments": 167, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "96.40", 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