{ "type": "genome", "identifier": "GCA_018003675.1", "organism": "Neisseria sp.", "title": "Neisseria sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018003675.1", "bioproject": "PRJNA524094", "biosample": "SAMN18119058", "wgs_master": "JAGNDU000000000.1", "refseq_category": "na", "taxid": "192066", "species_taxid": "192066", "organism_name": "Neisseria sp.", "infraspecific_name": "", "isolate": "Go_Prim_bin_65", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/16", "asm_name": "ASM1800367v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/003/675/GCA_018003675.1_ASM1800367v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-16", "dateModified": "2021-04-16", "datePublished": "2021-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria sp." ], "sample_taxid": [ "192066" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Goettingen" ], "sample_host_location_id": [], "data_size": "0.212 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 12.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "758615", "Number of Sequences": "170", "Longest Sequences (bp)": "15957", "N50 (bp)": "4602", "Gap Ratio (%)": "0.184547", "GCcontent (%)": "55.2", "Number of CDSs": "556", "Average Protein Length": "271.1", "Coding Ratio (%)": "59.6", "Number of rRNAs": "0", "Number of tRNAs": "14", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Uruburuella suis", "strain": "strain=1258/02", "accession": "GCA_022870845.1", "taxid": 252130, "species_taxid": 252130, "relation_to_type": "type", "validated": true, "ani": 97.2569, "matched_fragments": 154, "total_fragments": 161, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Uruburuella suis", "strain": "strain=DSM 17474", "accession": "GCA_004341385.1", "taxid": 252130, "species_taxid": 252130, "relation_to_type": "type", "validated": true, "ani": 97.2548, "matched_fragments": 150, "total_fragments": 161, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Uruburuella testudinis", "strain": "strain=CCUG 63373m", "accession": "GCA_022870865.1", "taxid": 1282863, "species_taxid": 1282863, "relation_to_type": "type", "validated": true, "ani": 82.1881, "matched_fragments": 136, "total_fragments": 161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_002108595.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 79.9766, "matched_fragments": 122, "total_fragments": 161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=NCTC13012", "accession": "GCA_900453685.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 79.9511, "matched_fragments": 123, "total_fragments": 161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_014055005.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 79.8983, "matched_fragments": 125, "total_fragments": 161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bergeriella denitrificans", "strain": "strain=NBRC 102155", "accession": "GCA_001592185.1", "taxid": 494, "species_taxid": 494, "relation_to_type": "type", "validated": true, "ani": 78.9136, "matched_fragments": 77, "total_fragments": 161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dumasiana", "strain": "strain=LMG 30012", "accession": "GCA_022870885.1", "taxid": 1931275, "species_taxid": 1931275, "relation_to_type": "type", "validated": true, "ani": 78.7885, "matched_fragments": 83, "total_fragments": 161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bergeriella denitrificans", "strain": "strain=NCTC10295", "accession": "GCA_900453875.1", "taxid": 494, 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