{ "type": "genome", "identifier": "GCA_018004535.1", "organism": "Acinetobacter sp.", "title": "Acinetobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018004535.1", "bioproject": "PRJNA524094", "biosample": "SAMN18119267", "wgs_master": "JAGNCB000000000.1", "refseq_category": "na", "taxid": "472", "species_taxid": "472", "organism_name": "Acinetobacter sp.", "infraspecific_name": "", "isolate": "Gw_Prim_bin_113", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/16", "asm_name": "ASM1800453v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/004/535/GCA_018004535.1_ASM1800453v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-16", "dateModified": "2021-04-16", "datePublished": "2021-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter sp." ], "sample_taxid": [ "472" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Greifswald" ], "sample_host_location_id": [], "data_size": "0.389 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 41.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1348677", "Number of Sequences": "208", "Longest Sequences (bp)": "39318", "N50 (bp)": "7918", "Gap Ratio (%)": "0.155708", "GCcontent (%)": "39.9", "Number of CDSs": "1126", "Average Protein Length": "288.3", "Coding Ratio (%)": "72.2", "Number of rRNAs": "0", "Number of tRNAs": "18", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter bohemicus", "strain": "strain=ANC 3994", "accession": "GCA_000367925.1", "taxid": 1435036, "species_taxid": 1435036, "relation_to_type": "type", "validated": true, "ani": 96.208, "matched_fragments": 315, "total_fragments": 350, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter terrae", "strain": "strain=ANC 4282", "accession": "GCA_013004375.1", "taxid": 2731247, "species_taxid": 2731247, "relation_to_type": "type", "validated": true, "ani": 85.5305, "matched_fragments": 283, "total_fragments": 350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrestris", "strain": "strain=ANC 4471", "accession": "GCA_004331155.1", "taxid": 2529843, "species_taxid": 2529843, "relation_to_type": "suspected-type", "validated": true, "ani": 84.9274, "matched_fragments": 272, "total_fragments": 350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=DSM 6963", "accession": "GCA_000949655.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 81.7111, "matched_fragments": 231, "total_fragments": 350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=FDAARGOS_910", "accession": "GCA_016027055.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 81.6756, "matched_fragments": 239, "total_fragments": 350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter shaoyimingii", "strain": "strain=323-1", "accession": "GCA_011578045.1", "taxid": 2715164, "species_taxid": 2715164, "relation_to_type": "type", "validated": true, "ani": 79.9635, "matched_fragments": 190, "total_fragments": 350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 79.9336, "matched_fragments": 201, "total_fragments": 350, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 41.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000367925.1", "gtdb_species": "s__Acinetobacter bohemicus", "ani": 96.208, "matched_fragments": 315, "total_fragments": 350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.89", "min_intra_species_ani": "95.82", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_900107285.1", "gtdb_species": "s__Acinetobacter kyonggiensis", "ani": 94.0496, "matched_fragments": 312, "total_fragments": 350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.53", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002135335.1", "gtdb_species": "s__Acinetobacter sp002135335", "ani": 91.2205, "matched_fragments": 303, "total_fragments": 350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004336635.1", "gtdb_species": "s__Acinetobacter sp004336635", "ani": 85.062, "matched_fragments": 283, "total_fragments": 350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.82", "min_intra_species_ani": "95.73", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004331155.1", "gtdb_species": "s__Acinetobacter terrestris", "ani": 84.9274, "matched_fragments": 272, "total_fragments": 350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.13", "min_intra_species_ani": "95.48", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_004331285.1", "gtdb_species": "s__Acinetobacter sp004331285", "ani": 84.5403, "matched_fragments": 274, "total_fragments": 350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902753875.1", "gtdb_species": "s__Acinetobacter bouvetii_A", "ani": 83.1827, "matched_fragments": 259, "total_fragments": 350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.019, "cell_length": 0.052, "doubling_h": -0.144, "growth_tmp": 30.578, "optimum_tmp": 29.638, "optimum_ph": 7.1, "genome_size": 3546146.356, "gc_content": 39.987, "coding_genes": 3356.54, "rRNA16S_genes": 6.191, "tRNA_genes": 76.716, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.034, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.652, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.347, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Moraxellaceae", "g__Acinetobacter", "s__Acinetobacter bohemicus" ], "_genome_taxon": [ "Acinetobacter", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Moraxellaceae", "g__Acinetobacter", "s__Acinetobacter bohemicus", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "Moraxellaceae", "Acinetobacter", "Acinetobacter", "bohemicus" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }