{
    "type": "genome",
    "identifier": "GCA_018005035.1",
    "organism": "Polaromonas sp.",
    "title": "Polaromonas sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018005035.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18119021",
        "wgs_master": "JAGNBB000000000.1",
        "refseq_category": "na",
        "taxid": "1869339",
        "species_taxid": "1869339",
        "organism_name": "Polaromonas sp.",
        "infraspecific_name": "",
        "isolate": "Go_Leine_bin_28",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/16",
        "asm_name": "ASM1800503v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/005/035/GCA_018005035.1_ASM1800503v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-16",
    "dateModified": "2021-04-16",
    "datePublished": "2021-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Polaromonas sp."
        ],
        "sample_taxid": [
            "1869339"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Goettingen"
        ],
        "sample_host_location_id": [],
        "data_size": "0.267 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 12.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "940104",
        "Number of Sequences": "243",
        "Longest Sequences (bp)": "9961",
        "N50 (bp)": "3852",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.3",
        "Number of CDSs": "716",
        "Average Protein Length": "285.1",
        "Coding Ratio (%)": "65.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "14",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Polaromonas jejuensis",
                "strain": "strain=NBRC 106434",
                "accession": "GCA_001598235.1",
                "taxid": 457502,
                "species_taxid": 457502,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0926,
                "matched_fragments": 124,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaromonas naphthalenivorans",
                "strain": "strain=CJ2",
                "accession": "GCA_000015505.1",
                "taxid": 216465,
                "species_taxid": 216465,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8952,
                "matched_fragments": 115,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaromonas eurypsychrophila",
                "strain": "strain=CGMCC 1.15322",
                "accession": "GCA_014641715.1",
                "taxid": 1614635,
                "species_taxid": 1614635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7775,
                "matched_fragments": 117,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga palleronii",
                "strain": "strain=NBRC 102513",
                "accession": "GCA_001571225.1",
                "taxid": 65655,
                "species_taxid": 65655,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.895,
                "matched_fragments": 94,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax paradoxus",
                "strain": "strain=NBRC 15149",
                "accession": "GCA_001591365.1",
                "taxid": 34073,
                "species_taxid": 34073,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.8343,
                "matched_fragments": 90,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax lacus",
                "strain": "strain=IMCC26218",
                "accession": "GCA_003415675.1",
                "taxid": 2184758,
                "species_taxid": 2184758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6857,
                "matched_fragments": 84,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax beijingensis",
                "strain": "strain=502",
                "accession": "GCA_003951285.1",
                "taxid": 2496117,
                "species_taxid": 2496117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4425,
                "matched_fragments": 92,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curvibacter gracilis",
                "strain": "strain=ATCC BAA-807",
                "accession": "GCA_000518645.1",
                "taxid": 230310,
                "species_taxid": 230310,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4233,
                "matched_fragments": 99,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curvibacter lanceolatus",
                "strain": "strain=ATCC 14669",
                "accession": "GCA_000381265.1",
                "taxid": 86182,
                "species_taxid": 86182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2862,
                "matched_fragments": 101,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga aromaticivorans",
                "strain": "strain=D2P1",
                "accession": "GCA_013387465.1",
                "taxid": 2610898,
                "species_taxid": 2610898,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1525,
                "matched_fragments": 90,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnohabitans parvus",
                "strain": "strain=II-B4",
                "accession": "GCA_003063455.1",
                "taxid": 540061,
                "species_taxid": 540061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1319,
                "matched_fragments": 71,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 12.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903941205.1",
                "gtdb_species": "s__Polaromonas sp903941205",
                "ani": 83.3296,
                "matched_fragments": 154,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116715.1",
                "gtdb_species": "s__Polaromonas sp900116715",
                "ani": 80.4321,
                "matched_fragments": 123,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900103405.1",
                "gtdb_species": "s__Polaromonas sp900103405",
                "ani": 80.3621,
                "matched_fragments": 127,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003711205.1",
                "gtdb_species": "s__Polaromonas sp003711205",
                "ani": 80.2517,
                "matched_fragments": 129,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000282655.1",
                "gtdb_species": "s__Polaromonas sp000282655",
                "ani": 80.1829,
                "matched_fragments": 124,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001598235.1",
                "gtdb_species": "s__Polaromonas jejuensis",
                "ani": 80.1194,
                "matched_fragments": 123,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018780625.1",
                "gtdb_species": "s__Polaromonas sp018780625",
                "ani": 79.6208,
                "matched_fragments": 108,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012927455.1",
                "gtdb_species": "s__Polaromonas sp012927455",
                "ani": 79.6085,
                "matched_fragments": 98,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013205645.1",
                "gtdb_species": "s__Polaromonas sp013205645",
                "ani": 79.5553,
                "matched_fragments": 94,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003415675.1",
                "gtdb_species": "s__Rhodoferax sp003415675",
                "ani": 78.6857,
                "matched_fragments": 84,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000381265.1",
                "gtdb_species": "s__Curvibacter lanceolatus",
                "ani": 78.2862,
                "matched_fragments": 101,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Curvibacter",
                "ani_circumscription_radius": 95.6079,
                "mean_intra_species_ani": "99.38",
                "min_intra_species_ani": "99.38",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001424545.1",
                "gtdb_species": "s__Ramlibacter sp001424545",
                "ani": 78.0175,
                "matched_fragments": 101,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ramlibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003063665.1",
                "gtdb_species": "s__Limnohabitans_A sp003063665",
                "ani": 78.0142,
                "matched_fragments": 89,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.02",
                "min_intra_species_ani": "95.55",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.055,
        "cell_length": 0.121,
        "doubling_h": null,
        "growth_tmp": 18.857,
        "optimum_tmp": 19.7,
        "optimum_ph": 6.85,
        "genome_size": 5249534.7,
        "gc_content": 60.395,
        "coding_genes": 4865.667,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 52.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.166,
        "range_salinity": null,
        "facultative_respiration": 0.142,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.857,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.5,
        "coccus_cell_shape": 0.5,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Polaromonas",
        "s__"
    ],
    "_genome_taxon": [
        "Polaromonas",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Polaromonas",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Polaromonas",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}