{
    "type": "genome",
    "identifier": "GCA_018005475.1",
    "organism": "Arenimonas sp.",
    "title": "Arenimonas sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018005475.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18119023",
        "wgs_master": "JAGNAD000000000.1",
        "refseq_category": "na",
        "taxid": "1872635",
        "species_taxid": "1872635",
        "organism_name": "Arenimonas sp.",
        "infraspecific_name": "",
        "isolate": "Go_Leine_bin_45",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/16",
        "asm_name": "ASM1800547v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/005/475/GCA_018005475.1_ASM1800547v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-16",
    "dateModified": "2021-04-16",
    "datePublished": "2021-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Arenimonas sp."
        ],
        "sample_taxid": [
            "1872635"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Goettingen"
        ],
        "sample_host_location_id": [],
        "data_size": "0.305 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 29.17,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1074628",
        "Number of Sequences": "280",
        "Longest Sequences (bp)": "10198",
        "N50 (bp)": "3866",
        "Gap Ratio (%)": "0.000931",
        "GCcontent (%)": "64.9",
        "Number of CDSs": "752",
        "Average Protein Length": "291.2",
        "Coding Ratio (%)": "61.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "13",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Arenimonas oryziterrae",
                "strain": "strain=DSM 21050",
                "accession": "GCA_000420545.1",
                "taxid": 498055,
                "species_taxid": 498055,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6787,
                "matched_fragments": 103,
                "total_fragments": 215,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas oryziterrae",
                "strain": "strain=YC6267",
                "accession": "GCA_000747135.1",
                "taxid": 498055,
                "species_taxid": 498055,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6121,
                "matched_fragments": 104,
                "total_fragments": 215,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas indica",
                "strain": "strain=PPL560",
                "accession": "GCA_022669045.1",
                "taxid": 2912242,
                "species_taxid": 2912242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1381,
                "matched_fragments": 75,
                "total_fragments": 215,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoxanthomonas winnipegensis",
                "strain": "strain=NML 130738",
                "accession": "GCA_004283755.1",
                "taxid": 2480810,
                "species_taxid": 2480810,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4689,
                "matched_fragments": 65,
                "total_fragments": 215,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas panaciterrae",
                "strain": "strain=Gsoil 068",
                "accession": "GCA_020511115.1",
                "taxid": 363885,
                "species_taxid": 363885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3373,
                "matched_fragments": 65,
                "total_fragments": 215,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 29.17,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000420545.1",
                "gtdb_species": "s__Arenimonas oryziterrae",
                "ani": 79.6787,
                "matched_fragments": 103,
                "total_fragments": 215,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014638745.1",
                "gtdb_species": "s__Arenimonas maotaiensis",
                "ani": 78.4583,
                "matched_fragments": 78,
                "total_fragments": 215,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004284195.1",
                "gtdb_species": "s__Pseudoxanthomonas_A sp004284195",
                "ani": 77.6656,
                "matched_fragments": 65,
                "total_fragments": 215,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "97.04",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_009496535.1",
                "gtdb_species": "s__Stenotrophomonas sp003504055",
                "ani": 77.5958,
                "matched_fragments": 77,
                "total_fragments": 215,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.53",
                "min_intra_species_ani": "96.53",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.318,
        "cell_length": 0.23,
        "doubling_h": null,
        "growth_tmp": 28.625,
        "optimum_tmp": 28.958,
        "optimum_ph": 7.3,
        "genome_size": 3086553.0,
        "gc_content": 68.199,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.666,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Xanthomonadales",
        "f__Xanthomonadaceae",
        "g__Arenimonas",
        "s__"
    ],
    "_genome_taxon": [
        "Arenimonas",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Xanthomonadales",
        "f__Xanthomonadaceae",
        "g__Arenimonas",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Xanthomonadales",
        "Xanthomonadaceae",
        "Arenimonas",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}