{ "type": "genome", "identifier": "GCA_018005685.1", "organism": "Shewanella sp.", "title": "Shewanella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018005685.1", "bioproject": "PRJNA524094", "biosample": "SAMN18119060", "wgs_master": "JAGMZV000000000.1", "refseq_category": "na", "taxid": "50422", "species_taxid": "50422", "organism_name": "Shewanella sp.", "infraspecific_name": "", "isolate": "Go_SlAct_bin_156", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/16", "asm_name": "ASM1800568v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/005/685/GCA_018005685.1_ASM1800568v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-16", "dateModified": "2021-04-16", "datePublished": "2021-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella sp." ], "sample_taxid": [ "50422" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Goettingen" ], "sample_host_location_id": [], "data_size": "0.560 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1926398", "Number of Sequences": "293", "Longest Sequences (bp)": "44227", "N50 (bp)": "7305", "Gap Ratio (%)": "0.218023", "GCcontent (%)": "45.2", "Number of CDSs": "1514", "Average Protein Length": "303.0", "Coding Ratio (%)": "71.5", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella oncorhynchi", "strain": "strain=S-1", "accession": "GCA_012584455.1", "taxid": 2726434, "species_taxid": 2726434, "relation_to_type": "type", "validated": true, "ani": 98.6597, "matched_fragments": 501, "total_fragments": 504, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shewanella hafniensis", "strain": "strain=ATCC BAA-1207", "accession": "GCA_019655335.1", "taxid": 365590, "species_taxid": 365590, "relation_to_type": "type", "validated": true, "ani": 91.448, "matched_fragments": 480, "total_fragments": 504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella baltica", "strain": "strain=NCTC10735", "accession": "GCA_900456975.1", "taxid": 62322, "species_taxid": 62322, "relation_to_type": "type", "validated": true, "ani": 91.0253, "matched_fragments": 485, "total_fragments": 504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella putrefaciens", "strain": "strain=ATCC 8071", "accession": "GCA_016406325.1", "taxid": 24, "species_taxid": 24, "relation_to_type": "type", "validated": true, "ani": 85.475, "matched_fragments": 413, "total_fragments": 504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella glacialipiscicola", "strain": "strain=LMG 23744", "accession": "GCA_023283485.1", "taxid": 614069, "species_taxid": 614069, "relation_to_type": "type", "validated": true, "ani": 85.0279, "matched_fragments": 432, "total_fragments": 504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella glacialipiscicola", "strain": 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