{
    "type": "genome",
    "identifier": "GCA_018005775.1",
    "organism": "Alicycliphilus sp.",
    "title": "Alicycliphilus sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018005775.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18119243",
        "wgs_master": "JAGMZO000000000.1",
        "refseq_category": "na",
        "taxid": "1872437",
        "species_taxid": "1872437",
        "organism_name": "Alicycliphilus sp.",
        "infraspecific_name": "",
        "isolate": "Gw_Inlet_bin_156",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/16",
        "asm_name": "ASM1800577v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/005/775/GCA_018005775.1_ASM1800577v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-16",
    "dateModified": "2021-04-16",
    "datePublished": "2021-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alicycliphilus sp."
        ],
        "sample_taxid": [
            "1872437"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Greifswald"
        ],
        "sample_host_location_id": [],
        "data_size": "0.396 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 8.8,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1435555",
        "Number of Sequences": "312",
        "Longest Sequences (bp)": "18421",
        "N50 (bp)": "4617",
        "Gap Ratio (%)": "0.013932",
        "GCcontent (%)": "68.9",
        "Number of CDSs": "1002",
        "Average Protein Length": "319.8",
        "Coding Ratio (%)": "67.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "6",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "species_taxid": 1177982,
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                "ani_threshold": 95,
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            {
                "organism_name": "Acidovorax caeni",
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                "accession": "GCA_001298675.1",
                "taxid": 343013,
                "species_taxid": 343013,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "accession": "GCA_900116825.1",
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                "relation_to_type": "type",
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                "matched_fragments": 202,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Melaminivora jejuensis",
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                "accession": "GCA_017811175.1",
                "taxid": 1267217,
                "species_taxid": 1267217,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 227,
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                "status": "below_threshold"
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            {
                "organism_name": "Acidovorax anthurii",
                "strain": "strain=CFPB 3232",
                "accession": "GCA_003269065.1",
                "taxid": 78229,
                "species_taxid": 78229,
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                "ani": 81.0906,
                "matched_fragments": 194,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Acidovorax carolinensis",
                "strain": "strain=NA3",
                "accession": "GCA_002157145.1",
                "taxid": 553814,
                "species_taxid": 553814,
                "relation_to_type": "type",
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                "ani": 80.8939,
                "matched_fragments": 200,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Comamonas terrae",
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                "accession": "GCA_001544075.1",
                "taxid": 673548,
                "species_taxid": 673548,
                "relation_to_type": "type",
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                "ani": 80.6134,
                "matched_fragments": 189,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Acidovorax citrulli",
                "strain": "strain=DSM 17060",
                "accession": "GCA_900100305.1",
                "taxid": 80869,
                "species_taxid": 80869,
                "relation_to_type": "type",
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                "ani": 80.265,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Diaphorobacter caeni",
                "strain": "strain=NR2-3-3-1",
                "accession": "GCA_015354245.1",
                "taxid": 2784387,
                "species_taxid": 2784387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0541,
                "matched_fragments": 168,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Simplicispira metamorpha",
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                "accession": "GCA_003568725.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_004341365.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas koreensis",
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                "accession": "GCA_021026195.1",
                "taxid": 160825,
                "species_taxid": 160825,
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                "validated": true,
                "ani": 78.8923,
                "matched_fragments": 148,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
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                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
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                "validated": true,
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                "matched_fragments": 172,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Diaphorobacter aerolatus",
                "strain": "strain=KACC 16536",
                "accession": "GCA_014489535.1",
                "taxid": 1288495,
                "species_taxid": 1288495,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter agri",
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                "accession": "GCA_012927085.1",
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                "ani": 78.5864,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCA_018054745.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            {
                "accession": "GCA_018240985.1",
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            {
                "accession": "GCF_000204645.1",
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            },
            {
                "accession": "GCA_018242005.1",
                "gtdb_species": "s__Alicycliphilus sp018242005",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "num_clustered_genomes": 3,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": null,
        "cell_length": null,
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        "growth_tmp": 29.0,
        "optimum_tmp": 30.0,
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    "_gtdb_taxon": [
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    "_genome_taxon": [
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        "f__Burkholderiaceae",
        "g__Alicycliphilus",
        "s__Alicycliphilus sp018054745",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Alicycliphilus",
        "Alicycliphilus",
        "sp018054745"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}