{
    "type": "genome",
    "identifier": "GCA_018006035.1",
    "organism": "Aeromonas sp.",
    "title": "Aeromonas sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018006035.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18119246",
        "wgs_master": "JAGMZD000000000.1",
        "refseq_category": "na",
        "taxid": "647",
        "species_taxid": "647",
        "organism_name": "Aeromonas sp.",
        "infraspecific_name": "",
        "isolate": "Gw_Inlet_bin_201",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/16",
        "asm_name": "ASM1800603v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/006/035/GCA_018006035.1_ASM1800603v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-16",
    "dateModified": "2021-04-16",
    "datePublished": "2021-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aeromonas sp."
        ],
        "sample_taxid": [
            "647"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Greifswald"
        ],
        "sample_host_location_id": [],
        "data_size": "0.601 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 25.0,
        "contamination": 8.33,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2102301",
        "Number of Sequences": "333",
        "Longest Sequences (bp)": "48930",
        "N50 (bp)": "7422",
        "Gap Ratio (%)": "0.195024",
        "GCcontent (%)": "60.2",
        "Number of CDSs": "1689",
        "Average Protein Length": "300.0",
        "Coding Ratio (%)": "72.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Aeromonas salmonicida subsp. pectinolytica",
                "strain": "strain=34mel",
                "accession": "GCA_002735225.1",
                "taxid": 96473,
                "species_taxid": 645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.5259,
                "matched_fragments": 490,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas salmonicida subsp. pectinolytica",
                "strain": "strain=34mel",
                "accession": "GCA_000447435.2",
                "taxid": 96473,
                "species_taxid": 645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.4811,
                "matched_fragments": 481,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas salmonicida subsp. salmonicida",
                "strain": "strain=CIP 103209",
                "accession": "GCA_000820065.1",
                "taxid": 29491,
                "species_taxid": 645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.2348,
                "matched_fragments": 481,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas salmonicida",
                "strain": "strain=NCTC12959",
                "accession": "GCA_900445115.1",
                "taxid": 645,
                "species_taxid": 645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1972,
                "matched_fragments": 484,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas salmonicida subsp. salmonicida",
                "strain": "strain=ATCC 33658",
                "accession": "GCA_001643305.1",
                "taxid": 29491,
                "species_taxid": 645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1737,
                "matched_fragments": 481,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas salmonicida subsp. masoucida",
                "strain": "strain=NBRC 13784",
                "accession": "GCA_000647955.1",
                "taxid": 197700,
                "species_taxid": 645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1247,
                "matched_fragments": 476,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas bestiarum",
                "strain": "strain=CECT 4227",
                "accession": "GCA_000819745.1",
                "taxid": 105751,
                "species_taxid": 105751,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.2828,
                "matched_fragments": 477,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromonas media",
                "strain": "strain=ATCC 33907",
                "accession": "GCA_018359985.1",
                "taxid": 651,
                "species_taxid": 651,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.6383,
                "matched_fragments": 458,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromonas media",
                "strain": "strain=CECT 4232",
                "accession": "GCA_000819985.1",
                "taxid": 651,
                "species_taxid": 651,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.6355,
                "matched_fragments": 443,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromonas encheleia",
                "strain": "strain=CECT 4342",
                "accession": "GCA_000819825.1",
                "taxid": 73010,
                "species_taxid": 73010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4724,
                "matched_fragments": 453,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromonas encheleia",
                "strain": "strain=NCTC12917",
                "accession": "GCA_900637545.1",
                "taxid": 73010,
                "species_taxid": 73010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4706,
                "matched_fragments": 457,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 25.0,
            "contamination": 8.33,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001643305.1",
                "gtdb_species": "s__Aeromonas salmonicida",
                "ani": 97.1737,
                "matched_fragments": 481,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.08",
                "min_intra_species_ani": "96.89",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 74,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000820005.1",
                "gtdb_species": "s__Aeromonas piscicola",
                "ani": 91.3534,
                "matched_fragments": 482,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.5033,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "97.81",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000819745.1",
                "gtdb_species": "s__Aeromonas bestiarum",
                "ani": 91.2828,
                "matched_fragments": 477,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.5033,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.31",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000820025.1",
                "gtdb_species": "s__Aeromonas popoffii",
                "ani": 89.7101,
                "matched_fragments": 456,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.17",
                "min_intra_species_ani": "98.00",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000819985.1",
                "gtdb_species": "s__Aeromonas media",
                "ani": 88.6767,
                "matched_fragments": 442,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "97.16",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_010974825.1",
                "gtdb_species": "s__Aeromonas rivipollensis",
                "ani": 88.4567,
                "matched_fragments": 457,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.26",
                "min_intra_species_ani": "95.18",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_900637545.1",
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                "mean_intra_species_ani": "98.38",
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                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_000764655.1",
                "gtdb_species": "s__Aeromonas aquatica",
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                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000764645.1",
                "gtdb_species": "s__Aeromonas finlandensis",
                "ani": 86.1465,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.127,
        "cell_length": 0.301,
        "doubling_h": 0.231,
        "growth_tmp": 29.712,
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        "optimum_ph": 7.945,
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        "gc_content": 60.359,
        "coding_genes": 4136.875,
        "rRNA16S_genes": 9.928,
        "tRNA_genes": 120.178,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.937,
        "range_salinity": 0.75,
        "facultative_respiration": 0.346,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.653,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Aeromonadaceae",
        "g__Aeromonas",
        "s__Aeromonas salmonicida"
    ],
    "_genome_taxon": [
        "Aeromonas",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Aeromonadaceae",
        "g__Aeromonas",
        "s__Aeromonas salmonicida",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Aeromonadaceae",
        "Aeromonas",
        "Aeromonas",
        "salmonicida"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}