{
    "type": "genome",
    "identifier": "GCA_018006115.1",
    "organism": "Propionivibrio sp.",
    "title": "Propionivibrio sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018006115.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18119266",
        "wgs_master": "JAGMYZ000000000.1",
        "refseq_category": "na",
        "taxid": "2212460",
        "species_taxid": "2212460",
        "organism_name": "Propionivibrio sp.",
        "infraspecific_name": "",
        "isolate": "Gw_Prim_bin_110",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/16",
        "asm_name": "ASM1800611v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/006/115/GCA_018006115.1_ASM1800611v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-16",
    "dateModified": "2021-04-16",
    "datePublished": "2021-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Propionivibrio sp."
        ],
        "sample_taxid": [
            "2212460"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Greifswald"
        ],
        "sample_host_location_id": [],
        "data_size": "0.521 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 45.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1825956",
        "Number of Sequences": "344",
        "Longest Sequences (bp)": "25057",
        "N50 (bp)": "5619",
        "Gap Ratio (%)": "0.060242",
        "GCcontent (%)": "61.2",
        "Number of CDSs": "1407",
        "Average Protein Length": "303.2",
        "Coding Ratio (%)": "70.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "21",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Propionivibrio limicola",
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                "accession": "GCA_009469695.1",
                "taxid": 167645,
                "species_taxid": 167645,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 152,
                "total_fragments": 431,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodocyclus purpureus",
                "strain": "strain=DSM 168",
                "accession": "GCA_016653115.1",
                "taxid": 1067,
                "species_taxid": 1067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5811,
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                "total_fragments": 431,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodocyclus tenuis",
                "strain": "strain=2761",
                "accession": "GCA_014197755.1",
                "taxid": 1066,
                "species_taxid": 1066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5536,
                "matched_fragments": 137,
                "total_fragments": 431,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodocyclus tenuis",
                "strain": "strain=2761",
                "accession": "GCA_009469755.1",
                "taxid": 1066,
                "species_taxid": 1066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5468,
                "matched_fragments": 135,
                "total_fragments": 431,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Propionivibrio dicarboxylicus",
                "strain": "strain=DSM 5885",
                "accession": "GCA_900099695.1",
                "taxid": 83767,
                "species_taxid": 83767,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1477,
                "matched_fragments": 170,
                "total_fragments": 431,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azonexus fungiphilus",
                "strain": "strain=DSM 23841",
                "accession": "GCA_003634965.1",
                "taxid": 146940,
                "species_taxid": 146940,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9208,
                "matched_fragments": 118,
                "total_fragments": 431,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azonexus hydrophilus",
                "strain": "strain=DSM 23864",
                "accession": "GCA_000429605.1",
                "taxid": 418702,
                "species_taxid": 418702,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8878,
                "matched_fragments": 114,
                "total_fragments": 431,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodocyclus gracilis",
                "strain": "strain=DSM 110",
                "accession": "GCA_009617575.1",
                "taxid": 2929842,
                "species_taxid": 2929842,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5882,
                "matched_fragments": 113,
                "total_fragments": 431,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Candidatus Accumulibacter contiguus",
                "strain": "",
                "accession": "GCA_012940005.1",
                "taxid": 2954381,
                "species_taxid": 2954381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0021,
                "matched_fragments": 99,
                "total_fragments": 431,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia eurypsychrophila",
                "strain": "strain=JCM 30074",
                "accession": "GCA_002760655.1",
                "taxid": 1485217,
                "species_taxid": 1485217,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.355,
                "matched_fragments": 61,
                "total_fragments": 431,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 45.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_017990155.1",
                "gtdb_species": "s__Propionivibrio sp017990155",
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                "matched_fragments": 348,
                "total_fragments": 431,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Propionivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.47",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017995515.1",
                "gtdb_species": "s__Propionivibrio sp017995515",
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                "matched_fragments": 316,
                "total_fragments": 431,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Propionivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001897745.1",
                "gtdb_species": "s__66-26 sp001897745",
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                "matched_fragments": 176,
                "total_fragments": 431,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__66-26",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.97",
                "min_intra_species_ani": "95.98",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_907163075.1",
                "gtdb_species": "s__Propionivibrio sp907163075",
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                "matched_fragments": 225,
                "total_fragments": 431,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Propionivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018262095.1",
                "gtdb_species": "s__Propionivibrio sp018262095",
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                "matched_fragments": 216,
                "total_fragments": 431,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Propionivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903910495.1",
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                "matched_fragments": 119,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Propionivibrio",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900099695.1",
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                "ani": 78.1477,
                "matched_fragments": 170,
                "total_fragments": 431,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Propionivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016208425.1",
                "gtdb_species": "s__JACQYA01 sp016208425",
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                "matched_fragments": 130,
                "total_fragments": 431,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__JACQYA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.043,
        "doubling_h": null,
        "growth_tmp": 31.333,
        "optimum_tmp": 28.5,
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        "genome_size": 4163762.666,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.333,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 0.5,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.5,
        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
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        "f__Rhodocyclaceae",
        "g__Propionivibrio",
        "s__Propionivibrio sp017990155"
    ],
    "_genome_taxon": [
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        "sp.",
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Rhodocyclaceae",
        "g__Propionivibrio",
        "s__Propionivibrio sp017990155",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Rhodocyclaceae",
        "Propionivibrio",
        "Propionivibrio",
        "sp017990155"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}