{ "type": "genome", "identifier": "GCA_018006475.1", "organism": "Pseudomonas sp.", "title": "Pseudomonas sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018006475.1", "bioproject": "PRJNA524094", "biosample": "SAMN18119241", "wgs_master": "JAGMYG000000000.1", "refseq_category": "na", "taxid": "306", "species_taxid": "306", "organism_name": "Pseudomonas sp.", "infraspecific_name": "", "isolate": "Gw_Inlet_bin_138", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/16", "asm_name": "ASM1800647v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/006/475/GCA_018006475.1_ASM1800647v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-16", "dateModified": "2021-04-16", "datePublished": "2021-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas sp." ], "sample_taxid": [ "306" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Greifswald" ], "sample_host_location_id": [], "data_size": "0.490 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 25.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1694113", "Number of Sequences": "381", "Longest Sequences (bp)": "23419", "N50 (bp)": "4684", "Gap Ratio (%)": "0.011806", "GCcontent (%)": "58.2", "Number of CDSs": "1324", "Average Protein Length": "274.3", "Coding Ratio (%)": "64.3", "Number of rRNAs": "0", "Number of tRNAs": "12", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas guineae", "strain": "strain=LMG 24016", "accession": "GCA_900113745.1", "taxid": 425504, "species_taxid": 425504, "relation_to_type": "type", "validated": true, "ani": 83.1195, "matched_fragments": 306, "total_fragments": 370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas peli", "strain": "strain=DSM 17833", "accession": "GCA_012986145.1", "taxid": 592361, "species_taxid": 592361, "relation_to_type": "type", "validated": true, "ani": 83.0707, "matched_fragments": 305, "total_fragments": 370, "ani_threshold": 95, "status": 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