{ "type": "genome", "identifier": "GCA_018006715.1", "organism": "Aeromonadaceae bacterium", "title": "Aeromonadaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018006715.1", "bioproject": "PRJNA524094", "biosample": "SAMN18119252", "wgs_master": "JAGMXT000000000.1", "refseq_category": "na", "taxid": "1948889", "species_taxid": "1948889", "organism_name": "Aeromonadaceae bacterium", "infraspecific_name": "", "isolate": "Gw_Inlet_bin_267", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/16", "asm_name": "ASM1800671v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/006/715/GCA_018006715.1_ASM1800671v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-16", "dateModified": "2021-04-16", "datePublished": "2021-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Aeromonadaceae bacterium" ], "sample_taxid": [ "1948889" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Greifswald" ], "sample_host_location_id": [], "data_size": "0.649 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 45.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2252564", "Number of Sequences": "475", "Longest Sequences (bp)": "38481", "N50 (bp)": "4890", "Gap Ratio (%)": "0.062151", "GCcontent (%)": "59.6", "Number of CDSs": "1710", "Average Protein Length": "291.5", "Coding Ratio (%)": "66.4", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromonas allosaccharophila", "strain": "strain=CECT 4199", "accession": "GCA_000819685.1", "taxid": 656, "species_taxid": 656, "relation_to_type": "type", "validated": true, "ani": 84.5937, "matched_fragments": 168, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas veronii", "strain": "strain=CECT 4257", "accession": "GCA_000820225.1", "taxid": 654, "species_taxid": 654, "relation_to_type": "type", "validated": true, "ani": 83.966, "matched_fragments": 167, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas veronii", "strain": "strain=ATCC 35624", "accession": "GCA_018359905.1", "taxid": 654, "species_taxid": 654, "relation_to_type": "type", "validated": true, "ani": 83.897, "matched_fragments": 165, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas finlandensis", "strain": "strain=4287D", "accession": "GCA_000764645.1", "taxid": 1543375, "species_taxid": 1543375, "relation_to_type": "type", "validated": true, "ani": 83.5397, "matched_fragments": 171, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas lacus", "strain": "strain=AE122", "accession": "GCA_000764665.1", "taxid": 558884, "species_taxid": 558884, "relation_to_type": "type", "validated": true, "ani": 82.6049, "matched_fragments": 177, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas australiensis", "strain": "strain=CECT 8023", "accession": "GCA_000819725.1", "taxid": 1114880, "species_taxid": 1114880, "relation_to_type": "type", "validated": true, "ani": 82.5164, "matched_fragments": 162, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas jandaei", "strain": "strain=CECT 4228", "accession": "GCA_000819955.1", "taxid": 650, "species_taxid": 650, "relation_to_type": "type", "validated": true, "ani": 82.4117, "matched_fragments": 178, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas jandaei", "strain": "strain=FDAARGOS_1523", "accession": "GCA_020341535.1", "taxid": 650, "species_taxid": 650, "relation_to_type": "type", "validated": true, "ani": 82.1933, "matched_fragments": 176, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas jandaei", "strain": "strain=FDAARGOS_986", "accession": "GCA_016127195.1", "taxid": 650, "species_taxid": 650, "relation_to_type": "type", "validated": true, "ani": 82.191, "matched_fragments": 182, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas enteropelogenes", "strain": "strain=CECT 4487", "accession": "GCA_000819845.1", "taxid": 29489, "species_taxid": 29489, "relation_to_type": "type", "validated": true, "ani": 81.4752, "matched_fragments": 179, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas enteropelogenes", "strain": "strain=FDAARGOS_1509", "accession": "GCA_020097315.1", "taxid": 29489, "species_taxid": 29489, "relation_to_type": "type", "validated": true, "ani": 81.3335, "matched_fragments": 183, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas tecta", "strain": "strain=CECT 7082", "accession": "GCA_000820185.2", "taxid": 324617, "species_taxid": 324617, "relation_to_type": "type", "validated": true, "ani": 81.1546, "matched_fragments": 175, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas aquatica", "strain": "strain=AE235", "accession": "GCA_000764655.1", "taxid": 558964, "species_taxid": 558964, "relation_to_type": "type", "validated": true, "ani": 81.0915, "matched_fragments": 180, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas taiwanensis", "strain": "strain=LMG 24683", "accession": "GCA_000699185.1", "taxid": 633417, "species_taxid": 633417, "relation_to_type": "type", "validated": true, "ani": 80.2889, "matched_fragments": 179, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas bivalvium", "strain": "strain=CECT 7113", "accession": "GCA_000819765.1", "taxid": 440079, "species_taxid": 440079, "relation_to_type": "type", "validated": true, "ani": 80.2121, "matched_fragments": 178, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas rivuli", "strain": "strain=DSM 22539", "accession": "GCA_000820045.1", "taxid": 648794, "species_taxid": 648794, "relation_to_type": "type", "validated": true, "ani": 80.0125, "matched_fragments": 169, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas molluscorum", "strain": "strain=848", "accession": "GCA_000388115.1", "taxid": 271417, "species_taxid": 271417, "relation_to_type": "type", "validated": true, "ani": 79.4562, "matched_fragments": 143, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas simiae", "strain": "strain=CIP 107798", "accession": "GCA_000820125.1", "taxid": 218936, "species_taxid": 218936, "relation_to_type": "type", "validated": true, "ani": 78.653, "matched_fragments": 164, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellella endophytica", "strain": "strain=59N8", "accession": "GCA_003012775.1", "taxid": 2116700, "species_taxid": 2116700, "relation_to_type": "type", "validated": true, "ani": 77.2661, "matched_fragments": 83, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanisphaera psychrotolerans", "strain": "strain=LAM-WHM-ZC", "accession": "GCA_001870485.1", "taxid": 1414654, "species_taxid": 1414654, "relation_to_type": "type", "validated": true, "ani": 76.8333, "matched_fragments": 67, "total_fragments": 517, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 45.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000819685.1", "gtdb_species": "s__Aeromonas allosaccharophila", "ani": 84.5937, "matched_fragments": 168, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.32", "min_intra_species_ani": "95.53", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_000820225.1", "gtdb_species": "s__Aeromonas veronii", "ani": 83.9094, "matched_fragments": 168, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.54", "min_intra_species_ani": "96.01", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 159, "status": "-" }, { "accession": "GCA_018059485.1", "gtdb_species": "s__JAGOXX01 sp018059485", "ani": 83.7721, "matched_fragments": 171, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__JAGOXX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000764645.1", "gtdb_species": "s__Aeromonas finlandensis", "ani": 83.5397, "matched_fragments": 171, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019048265.1", "gtdb_species": "s__Aeromonas veronii_A", "ani": 83.4576, "matched_fragments": 172, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.07", "min_intra_species_ani": "95.82", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000764665.1", "gtdb_species": "s__Aeromonas lacus", "ani": 82.6049, "matched_fragments": 177, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.8323, "mean_intra_species_ani": "96.97", "min_intra_species_ani": "96.97", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014204135.1", "gtdb_species": "s__Aeromonas fluvialis_A", "ani": 82.5503, "matched_fragments": 165, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000819955.1", "gtdb_species": "s__Aeromonas jandaei", "ani": 82.4117, "matched_fragments": 178, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.8323, "mean_intra_species_ani": "96.79", "min_intra_species_ani": "96.38", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 26, "status": "-" }, { "accession": "GCF_000819845.1", "gtdb_species": "s__Aeromonas enteropelogenes", "ani": 81.5146, "matched_fragments": 178, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.20", "min_intra_species_ani": "96.87", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002812985.1", "gtdb_species": "s__Aeromonas lusitana", "ani": 81.1768, "matched_fragments": 174, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000820185.1", "gtdb_species": "s__Aeromonas tecta", "ani": 81.1546, "matched_fragments": 175, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000764655.1", "gtdb_species": "s__Aeromonas aquatica", "ani": 81.0915, "matched_fragments": 180, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000819765.1", "gtdb_species": "s__Aeromonas bivalvium", "ani": 80.18, "matched_fragments": 179, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000388115.1", "gtdb_species": "s__Aeromonas molluscorum", "ani": 79.4904, "matched_fragments": 142, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000820125.1", "gtdb_species": "s__Aeromonas simiae", "ani": 78.653, "matched_fragments": 164, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.54", "min_intra_species_ani": "96.54", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003012775.1", "gtdb_species": "s__Zobellella_C endophytica", "ani": 77.2327, "matched_fragments": 84, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Zobellella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001870485.1", "gtdb_species": "s__Oceanisphaera psychrotolerans", "ani": 76.8333, "matched_fragments": 67, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.136, "cell_length": 0.196, "doubling_h": 0.231, "growth_tmp": 29.287, "optimum_tmp": 29.665, "optimum_ph": 7.724, "genome_size": 4310957.695, "gc_content": 59.107, "coding_genes": 3912.254, "rRNA16S_genes": 9.35, "tRNA_genes": 113.217, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.869, "range_salinity": 0.75, "facultative_respiration": 0.378, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.621, "mesophilic_range_tmp": 0.888, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.111, "bacillus_cell_shape": 0.913, "coccus_cell_shape": 0.086, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Aeromonadaceae", "g__JAGOXX01", "s__" ], "_genome_taxon": [ "Aeromonadaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Aeromonadaceae", "g__JAGOXX01", "s__", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Aeromonadaceae", "JAGOXX01", "s", "", "" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }