{ "type": "genome", "identifier": "GCA_018006895.1", "organism": "Citrobacter sp.", "title": "Citrobacter sp.", "description": "contaminated; derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018006895.1", "bioproject": "PRJNA524094", "biosample": "SAMN18119168", "wgs_master": "JAGMXN000000000.1", "refseq_category": "na", "taxid": "1896336", "species_taxid": "1896336", "organism_name": "Citrobacter sp.", "infraspecific_name": "", "isolate": "Go_UH_bin_63", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/16", "asm_name": "ASM1800689v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/006/895/GCA_018006895.1_ASM1800689v1", "excluded_from_refseq": "contaminated; derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-16", "dateModified": "2021-04-16", "datePublished": "2021-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Citrobacter sp." ], "sample_taxid": [ "1896336" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Goettingen" ], "sample_host_location_id": [], "data_size": "0.682 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 20.83, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2339398", "Number of Sequences": "494", "Longest Sequences (bp)": "26915", "N50 (bp)": "4836", "Gap Ratio (%)": "0.017098", "GCcontent (%)": "51.9", "Number of CDSs": "1840", "Average Protein Length": "284.0", "Coding Ratio (%)": "67.0", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Citrobacter freundii", "strain": "strain=ATCC 8090", "accession": "GCA_011064845.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 89.5116, "matched_fragments": 378, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=ATCC 8090", "accession": "GCA_000734905.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 89.5048, "matched_fragments": 370, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=NBRC 12681", "accession": "GCA_000759735.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 89.4952, "matched_fragments": 377, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=MTCC 1658", "accession": "GCA_000312465.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 89.4655, "matched_fragments": 373, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter portucalensis", "strain": "strain=A60", "accession": "GCA_002042885.1", "taxid": 1639133, "species_taxid": 1639133, "relation_to_type": "type", "validated": true, "ani": 88.0919, "matched_fragments": 377, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter europaeus", "strain": "strain=97/79", "accession": "GCA_900079995.3", "taxid": 1914243, "species_taxid": 1914243, "relation_to_type": "type", "validated": true, "ani": 87.4937, "matched_fragments": 380, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter arsenatis", "strain": "strain=LY-1", "accession": "GCA_004353845.1", "taxid": 2546350, "species_taxid": 2546350, "relation_to_type": "type", "validated": true, "ani": 87.3932, "matched_fragments": 383, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter youngae", "strain": "strain=NCTC13709", "accession": "GCA_900638065.1", "taxid": 133448, "species_taxid": 133448, "relation_to_type": "type", "validated": true, "ani": 86.7259, "matched_fragments": 366, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter youngae", "strain": "strain=CCUG 30791", "accession": "GCA_003818115.1", "taxid": 133448, "species_taxid": 133448, "relation_to_type": "type", "validated": true, "ani": 86.7012, "matched_fragments": 363, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter pasteurii", "strain": "strain=CIP 55.13", "accession": "GCA_000826205.1", "taxid": 1563222, "species_taxid": 1563222, "relation_to_type": "type", "validated": true, "ani": 86.4868, "matched_fragments": 365, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter pasteurii", "strain": "strain=FDAARGOS 1424", "accession": "GCA_019047765.1", "taxid": 1563222, "species_taxid": 1563222, "relation_to_type": "type", "validated": true, "ani": 86.4642, "matched_fragments": 371, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 82.3163, "matched_fragments": 252, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 81.9376, "matched_fragments": 298, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 81.6965, "matched_fragments": 268, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salmonella enterica subsp. enterica", "strain": "strain=PartC-Senterica-RM8376", "accession": "GCA_022869965.1", "taxid": 59201, "species_taxid": 28901, "relation_to_type": "suspected-type", 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