{
    "type": "genome",
    "identifier": "GCA_018007075.1",
    "organism": "Chromatiaceae bacterium",
    "title": "Chromatiaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018007075.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18119184",
        "wgs_master": "JAGMXD000000000.1",
        "refseq_category": "na",
        "taxid": "2049432",
        "species_taxid": "2049432",
        "organism_name": "Chromatiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "Gw_Bodden_bin_177",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/16",
        "asm_name": "ASM1800707v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/007/075/GCA_018007075.1_ASM1800707v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-16",
    "dateModified": "2021-04-16",
    "datePublished": "2021-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chromatiaceae bacterium"
        ],
        "sample_taxid": [
            "2049432"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Greifswald"
        ],
        "sample_host_location_id": [],
        "data_size": "0.855 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 12.5,
        "contamination": 2.08,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3006435",
        "Number of Sequences": "587",
        "Longest Sequences (bp)": "24855",
        "N50 (bp)": "5325",
        "Gap Ratio (%)": "0.026610",
        "GCcontent (%)": "65.1",
        "Number of CDSs": "2323",
        "Average Protein Length": "286.2",
        "Coding Ratio (%)": "66.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thiocystis violacea",
                "strain": "strain=DSM 207",
                "accession": "GCA_016583575.1",
                "taxid": 13725,
                "species_taxid": 13725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4473,
                "matched_fragments": 104,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa bogorovii",
                "strain": "strain=BBS",
                "accession": "GCA_021228795.1",
                "taxid": 521689,
                "species_taxid": 521689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.94,
                "matched_fragments": 64,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allochromatium tepidum",
                "strain": "strain=NZ",
                "accession": "GCA_018409545.1",
                "taxid": 553982,
                "species_taxid": 553982,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8338,
                "matched_fragments": 73,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa rosea",
                "strain": "strain=DSM 235",
                "accession": "GCA_003634315.1",
                "taxid": 69360,
                "species_taxid": 69360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8231,
                "matched_fragments": 86,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioflavicoccus mobilis",
                "strain": "strain=8321",
                "accession": "GCA_000327045.1",
                "taxid": 80679,
                "species_taxid": 80679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4087,
                "matched_fragments": 60,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
                "taxid": 1424203,
                "species_taxid": 1424203,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2514,
                "matched_fragments": 56,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 12.5,
            "contamination": 2.08,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016714645.1",
                "gtdb_species": "s__M0108 sp016714645",
                "ani": 89.8193,
                "matched_fragments": 414,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__M0108",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018435665.1",
                "gtdb_species": "s__M0108 sp018435665",
                "ani": 80.4681,
                "matched_fragments": 261,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__M0108",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "99.16",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009928645.1",
                "gtdb_species": "s__M0108 sp009928645",
                "ani": 80.3498,
                "matched_fragments": 215,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__M0108",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019136395.1",
                "gtdb_species": "s__M0108 sp019136395",
                "ani": 80.0773,
                "matched_fragments": 229,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__M0108",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_006227775.1",
                "gtdb_species": "s__M0108 sp006227775",
                "ani": 79.904,
                "matched_fragments": 157,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__M0108",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.061,
        "cell_length": 0.291,
        "doubling_h": null,
        "growth_tmp": 27.411,
        "optimum_tmp": 29.481,
        "optimum_ph": 7.475,
        "genome_size": 4474068.505,
        "gc_content": 60.319,
        "coding_genes": 3685.6,
        "rRNA16S_genes": 2.25,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.851,
        "range_salinity": 1.0,
        "facultative_respiration": 0.076,
        "anaerobic_respiration": 0.641,
        "aerobic_respiration": 0.282,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.642,
        "coccus_cell_shape": 0.357,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Chromatiales",
        "f__Chromatiaceae",
        "g__M0108",
        "s__"
    ],
    "_genome_taxon": [
        "Chromatiaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Chromatiales",
        "f__Chromatiaceae",
        "g__M0108",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Chromatiales",
        "Chromatiaceae",
        "M0108",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}