{
    "type": "genome",
    "identifier": "GCA_018052705.1",
    "organism": "Selenomonas sp.",
    "title": "Selenomonas sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018052705.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18120864",
        "wgs_master": "JAGPMW000000000.1",
        "refseq_category": "na",
        "taxid": "2053611",
        "species_taxid": "2053611",
        "organism_name": "Selenomonas sp.",
        "infraspecific_name": "",
        "isolate": "Gw_UH_bin_41",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/17",
        "asm_name": "ASM1805270v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/052/705/GCA_018052705.1_ASM1805270v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-17",
    "dateModified": "2021-04-17",
    "datePublished": "2021-04-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Selenomonas sp."
        ],
        "sample_taxid": [
            "2053611"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Greifswald"
        ],
        "sample_host_location_id": [],
        "data_size": "0.622 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2170087",
        "Number of Sequences": "58",
        "Longest Sequences (bp)": "140932",
        "N50 (bp)": "58393",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.9",
        "Number of CDSs": "2019",
        "Average Protein Length": "318.7",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "5",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mitsuokella multacida",
                "strain": "strain=DSM 20544",
                "accession": "GCA_000155955.1",
                "taxid": 52226,
                "species_taxid": 52226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.222,
                "matched_fragments": 151,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas ruminantium subsp. ruminantium",
                "strain": "strain=ATCC 12561",
                "accession": "GCA_000424065.1",
                "taxid": 114196,
                "species_taxid": 971,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1126,
                "matched_fragments": 168,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas montiformis",
                "strain": "strain=WCA-380-WT-3B3",
                "accession": "GCA_009697385.1",
                "taxid": 2652285,
                "species_taxid": 2652285,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0871,
                "matched_fragments": 201,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mitsuokella jalaludinii",
                "strain": "strain=DSM 13811",
                "accession": "GCA_000702905.1",
                "taxid": 187979,
                "species_taxid": 187979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0029,
                "matched_fragments": 138,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018052705.1",
                "gtdb_species": "s__Selenomonas_A sp018052705",
                "ani": 100.0,
                "matched_fragments": 692,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_015058575.1",
                "gtdb_species": "s__Selenomonas_A ruminantium_O",
                "ani": 79.0043,
                "matched_fragments": 247,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116485.1",
                "gtdb_species": "s__Selenomonas_A ruminantium_G",
                "ani": 78.9538,
                "matched_fragments": 262,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000702005.1",
                "gtdb_species": "s__Selenomonas_A sp000702005",
                "ani": 78.9533,
                "matched_fragments": 211,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.34",
                "min_intra_species_ani": "98.34",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900113715.1",
                "gtdb_species": "s__Selenomonas_A ruminantium_F",
                "ani": 78.8933,
                "matched_fragments": 260,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.92",
                "min_intra_species_ani": "97.43",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900100835.1",
                "gtdb_species": "s__Selenomonas_A ruminantium_E",
                "ani": 78.7271,
                "matched_fragments": 218,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015058625.1",
                "gtdb_species": "s__Selenomonas_A ruminantium_N",
                "ani": 78.3398,
                "matched_fragments": 168,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.40",
                "min_intra_species_ani": "96.40",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000687995.1",
                "gtdb_species": "s__Selenomonas_A ruminantium_B",
                "ani": 78.2217,
                "matched_fragments": 179,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.25",
                "min_intra_species_ani": "95.94",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000424065.1",
                "gtdb_species": "s__Selenomonas_A ruminantium",
                "ani": 78.1451,
                "matched_fragments": 169,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009697385.1",
                "gtdb_species": "s__Selenomonas_A montiformis",
                "ani": 78.073,
                "matched_fragments": 203,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.83",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000284095.1",
                "gtdb_species": "s__Selenomonas_A lactilytica",
                "ani": 77.9849,
                "matched_fragments": 191,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900142515.1",
                "gtdb_species": "s__Selenomonas_A ruminantium_D",
                "ani": 77.9437,
                "matched_fragments": 186,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900315155.1",
                "gtdb_species": "s__UBA2897 sp900315155",
                "ani": 77.7557,
                "matched_fragments": 120,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__UBA2897",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.70",
                "min_intra_species_ani": "99.40",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902781305.1",
                "gtdb_species": "s__Selenomonas_A ruminantium_K",
                "ani": 77.4729,
                "matched_fragments": 147,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.19",
                "min_intra_species_ani": "96.12",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.045,
        "cell_length": 0.585,
        "doubling_h": 0.403,
        "growth_tmp": 36.9,
        "optimum_tmp": 38.444,
        "optimum_ph": 7.1,
        "genome_size": 2486055.234,
        "gc_content": 54.791,
        "coding_genes": 2841.5,
        "rRNA16S_genes": 5.5,
        "tRNA_genes": 62.5,
        "gram_stain": 0.142,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.142,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.857,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Selenomonadales",
        "f__Selenomonadaceae",
        "g__Selenomonas_A",
        "s__Selenomonas_A sp018052705"
    ],
    "_genome_taxon": [
        "Selenomonas",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Selenomonadales",
        "f__Selenomonadaceae",
        "g__Selenomonas_A",
        "s__Selenomonas_A sp018052705",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Selenomonadales",
        "Selenomonadaceae",
        "Selenomonas",
        "A",
        "Selenomonas",
        "A",
        "sp018052705"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}