{
    "type": "genome",
    "identifier": "GCA_018052725.1",
    "organism": "Syntrophaceae bacterium",
    "title": "Syntrophaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018052725.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18120725",
        "wgs_master": "JAGPMU000000000.1",
        "refseq_category": "na",
        "taxid": "2052184",
        "species_taxid": "2052184",
        "organism_name": "Syntrophaceae bacterium",
        "infraspecific_name": "",
        "isolate": "Gw_SlDig_bin_41",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/17",
        "asm_name": "ASM1805272v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/052/725/GCA_018052725.1_ASM1805272v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-17",
    "dateModified": "2021-04-17",
    "datePublished": "2021-04-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Syntrophaceae bacterium"
        ],
        "sample_taxid": [
            "2052184"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Greifswald"
        ],
        "sample_host_location_id": [],
        "data_size": "0.647 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2260185",
        "Number of Sequences": "67",
        "Longest Sequences (bp)": "156884",
        "N50 (bp)": "60236",
        "Gap Ratio (%)": "0.026546",
        "GCcontent (%)": "45.2",
        "Number of CDSs": "2089",
        "Average Protein Length": "316.9",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002418825.1",
                "gtdb_species": "s__UBA4810 sp002418825",
                "ani": 99.4203,
                "matched_fragments": 570,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__UBA4810",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
                "min_intra_species_ani": "99.36",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002402545.1",
                "gtdb_species": "s__UBA4810 sp002402545",
                "ani": 80.2518,
                "matched_fragments": 307,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__UBA4810",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016928765.1",
                "gtdb_species": "s__UBA4810 sp016928765",
                "ani": 79.8733,
                "matched_fragments": 291,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__UBA4810",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002478265.1",
                "gtdb_species": "s__UBA4810 sp002478265",
                "ani": 79.7333,
                "matched_fragments": 308,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__UBA4810",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011046295.1",
                "gtdb_species": "s__UBA4810 sp011046295",
                "ani": 79.1004,
                "matched_fragments": 240,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__UBA4810",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001797845.1",
                "gtdb_species": "s__UBA4810 sp001797845",
                "ani": 77.7897,
                "matched_fragments": 201,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__UBA4810",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018436925.1",
                "gtdb_species": "s__UBA8904 sp018436925",
                "ani": 77.4188,
                "matched_fragments": 84,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__UBA8904",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001683985.1",
                "gtdb_species": "s__Smithella sp001683985",
                "ani": 77.3113,
                "matched_fragments": 93,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__Smithella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009668925.1",
                "gtdb_species": "s__UBA8904 sp009668925",
                "ani": 77.2939,
                "matched_fragments": 79,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__UBA8904",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003142535.1",
                "gtdb_species": "s__Fen-1166 sp003142535",
                "ani": 77.2725,
                "matched_fragments": 73,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__Fen-1166",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002840555.1",
                "gtdb_species": "s__Smithella sp002840555",
                "ani": 77.1181,
                "matched_fragments": 116,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__Smithella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002347685.1",
                "gtdb_species": "s__UBA8904 sp002347685",
                "ani": 77.0032,
                "matched_fragments": 85,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__UBA8904",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007244375.1",
                "gtdb_species": "s__Smithella sp001412345",
                "ani": 76.8629,
                "matched_fragments": 84,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__Smithella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003141615.1",
                "gtdb_species": "s__Smithella sp003141615",
                "ani": 76.7163,
                "matched_fragments": 95,
                "total_fragments": 721,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__Smithellaceae;g__Smithella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.094,
        "cell_length": 0.377,
        "doubling_h": 1.431,
        "growth_tmp": 35.0,
        "optimum_tmp": 34.722,
        "optimum_ph": 7.149,
        "genome_size": 4176389.15,
        "gc_content": 50.41,
        "coding_genes": 3784.666,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 48.333,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.666,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.333,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Syntrophia",
        "o__Syntrophales",
        "f__Smithellaceae",
        "g__UBA4810",
        "s__UBA4810 sp002418825"
    ],
    "_genome_taxon": [
        "Syntrophaceae",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Syntrophia",
        "o__Syntrophales",
        "f__Smithellaceae",
        "g__UBA4810",
        "s__UBA4810 sp002418825",
        "Bacteria",
        "Desulfobacterota",
        "Syntrophia",
        "Syntrophales",
        "Smithellaceae",
        "UBA4810",
        "UBA4810",
        "sp002418825"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}