{ "type": "genome", "identifier": "GCA_018052875.1", "organism": "Phascolarctobacterium sp.", "title": "Phascolarctobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018052875.1", "bioproject": "PRJNA524094", "biosample": "SAMN18120872", "wgs_master": "JAGPMP000000000.1", "refseq_category": "na", "taxid": "2049039", "species_taxid": "2049039", "organism_name": "Phascolarctobacterium sp.", "infraspecific_name": "", "isolate": "Gw_UH_bin_71", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/17", "asm_name": "ASM1805287v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/052/875/GCA_018052875.1_ASM1805287v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-17", "dateModified": "2021-04-17", "datePublished": "2021-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Phascolarctobacterium sp." ], "sample_taxid": [ "2049039" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Greifswald" ], "sample_host_location_id": [], "data_size": "0.346 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 58.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1206628", "Number of Sequences": "77", "Longest Sequences (bp)": "80308", "N50 (bp)": "20872", "Gap Ratio (%)": "0.033150", "GCcontent (%)": "42.6", "Number of CDSs": "1059", "Average Protein Length": "322.4", "Coding Ratio (%)": "84.9", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phascolarctobacterium faecium", "strain": "strain=DSM 14760", "accession": "GCA_003269275.1", "taxid": 33025, "species_taxid": 33025, "relation_to_type": "type", "validated": true, "ani": 99.5171, "matched_fragments": 365, "total_fragments": 368, "ani_threshold": 95, "status": "conclusive" } ], "cc_result": { "completeness": 58.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003269275.1", "gtdb_species": "s__Phascolarctobacterium faecium", "ani": 99.5171, "matched_fragments": 365, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 33, "status": "conclusive" }, { "accession": "GCA_900551745.1", "gtdb_species": "s__Phascolarctobacterium sp900551745", "ani": 94.386, "matched_fragments": 267, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "98.93", "mean_intra_species_af": "0.62", "min_intra_species_af": "0.62", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900545535.1", "gtdb_species": "s__Phascolarctobacterium sp900545535", "ani": 85.407, "matched_fragments": 304, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.61", "min_intra_species_ani": "97.37", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900544795.1", "gtdb_species": "s__Phascolarctobacterium sp900544795", "ani": 81.6866, "matched_fragments": 265, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "98.29", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900545025.1", "gtdb_species": "s__Phascolarctobacterium_A sp900545025", "ani": 78.5291, "matched_fragments": 61, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900541915.1", "gtdb_species": "s__Phascolarctobacterium_A sp900541915", "ani": 78.1176, "matched_fragments": 69, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.75", "min_intra_species_ani": "96.74", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.301, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 2317131.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_C", "c__Negativicutes", "o__Acidaminococcales", "f__Acidaminococcaceae", "g__Phascolarctobacterium", "s__Phascolarctobacterium faecium" ], "_genome_taxon": [ "Phascolarctobacterium", "sp.", "d__Bacteria", "p__Bacillota_C", "c__Negativicutes", "o__Acidaminococcales", "f__Acidaminococcaceae", "g__Phascolarctobacterium", "s__Phascolarctobacterium faecium", "Bacteria", "Bacillota", "C", "Negativicutes", "Acidaminococcales", "Acidaminococcaceae", "Phascolarctobacterium", "Phascolarctobacterium", "faecium" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }