{ "type": "genome", "identifier": "GCA_018053185.1", "organism": "Syntrophobacteraceae bacterium", "title": "Syntrophobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018053185.1", "bioproject": "PRJNA524094", "biosample": "SAMN18120731", "wgs_master": "JAGPLX000000000.1", "refseq_category": "na", "taxid": "2052185", "species_taxid": "2052185", "organism_name": "Syntrophobacteraceae bacterium", "infraspecific_name": "", "isolate": "Gw_SlDig_bin_70", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/17", "asm_name": "ASM1805318v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/053/185/GCA_018053185.1_ASM1805318v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-17", "dateModified": "2021-04-17", "datePublished": "2021-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Syntrophobacteraceae bacterium" ], "sample_taxid": [ "2052185" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Greifswald" ], "sample_host_location_id": [], "data_size": "0.754 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2634335", "Number of Sequences": "111", "Longest Sequences (bp)": "137070", "N50 (bp)": "44549", "Gap Ratio (%)": "0.049348", "GCcontent (%)": "57.2", "Number of CDSs": "2264", "Average Protein Length": "315.1", "Coding Ratio (%)": "81.2", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Syntrophobacter fumaroxidans", "strain": "strain=MPOB", "accession": "GCA_000014965.1", "taxid": 119484, "species_taxid": 119484, "relation_to_type": "type", "validated": true, "ani": 76.1436, "matched_fragments": 86, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfoglaeba alkanexedens", "strain": "strain=ALDC", "accession": "GCA_005377625.1", "taxid": 361111, "species_taxid": 361111, "relation_to_type": "type", "validated": true, "ani": 76.0922, "matched_fragments": 60, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018053185.1", "gtdb_species": "s__JAGPLX01 sp018053185", "ani": 100.0, "matched_fragments": 819, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__JAGPLX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_013314815.1", "gtdb_species": "s__JABUEY01 sp013314815", "ani": 76.5866, "matched_fragments": 71, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__JABUEY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014359885.1", "gtdb_species": "s__Desulfacinum sp014359885", "ani": 76.3375, "matched_fragments": 80, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__DSM-9756;g__Desulfacinum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000014965.1", "gtdb_species": "s__Syntrophobacter fumaroxidans", "ani": 76.1436, "matched_fragments": 86, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__Syntrophobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005377625.1", "gtdb_species": "s__Desulfoglaeba alkanexedens", "ani": 76.0905, "matched_fragments": 60, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__DSM-9756;g__Desulfoglaeba", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001603845.1", "gtdb_species": "s__SbD1 sp001603845", "ani": 75.8155, "matched_fragments": 51, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__SbD1", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.055, "cell_length": 0.286, "doubling_h": 1.991, "growth_tmp": 46.0, "optimum_tmp": 49.6, "optimum_ph": 7.033, "genome_size": 3820158.76, "gc_content": 59.9, "coding_genes": 4094.0, "rRNA16S_genes": 2.0, "tRNA_genes": 50.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.4, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.4, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.6, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__Syntrophobacteria", "o__Syntrophobacterales", "f__Syntrophobacteraceae", "g__JAGPLX01", "s__JAGPLX01 sp018053185" ], "_genome_taxon": [ "Syntrophobacteraceae", "bacterium", "d__Bacteria", "p__Desulfobacterota", "c__Syntrophobacteria", "o__Syntrophobacterales", "f__Syntrophobacteraceae", "g__JAGPLX01", "s__JAGPLX01 sp018053185", "Bacteria", "Desulfobacterota", "Syntrophobacteria", "Syntrophobacterales", "Syntrophobacteraceae", "JAGPLX01", "JAGPLX01", "sp018053185" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }