{
    "type": "genome",
    "identifier": "GCA_018054365.1",
    "organism": "Syntrophorhabdus sp.",
    "title": "Syntrophorhabdus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018054365.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18120711",
        "wgs_master": "JAGPJP000000000.1",
        "refseq_category": "na",
        "taxid": "2699756",
        "species_taxid": "2699756",
        "organism_name": "Syntrophorhabdus sp.",
        "infraspecific_name": "",
        "isolate": "Gw_SlDig_bin_301",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/17",
        "asm_name": "ASM1805436v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/054/365/GCA_018054365.1_ASM1805436v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-17",
    "dateModified": "2021-04-17",
    "datePublished": "2021-04-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Syntrophorhabdus sp."
        ],
        "sample_taxid": [
            "2699756"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Greifswald"
        ],
        "sample_host_location_id": [],
        "data_size": "0.794 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2752144",
        "Number of Sequences": "204",
        "Longest Sequences (bp)": "81855",
        "N50 (bp)": "20563",
        "Gap Ratio (%)": "0.214378",
        "GCcontent (%)": "44.0",
        "Number of CDSs": "2425",
        "Average Protein Length": "302.5",
        "Coding Ratio (%)": "80.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Syntrophorhabdus aromaticivorans",
                "strain": "strain=UI",
                "accession": "GCA_000512235.1",
                "taxid": 328301,
                "species_taxid": 328301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0746,
                "matched_fragments": 66,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002067585.1",
                "gtdb_species": "s__Syntrophorhabdus sp002067585",
                "ani": 99.1106,
                "matched_fragments": 673,
                "total_fragments": 817,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_G;c__Syntrophorhabdia;o__Syntrophorhabdales;f__Syntrophorhabdaceae;g__Syntrophorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.35",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000512235.1",
                "gtdb_species": "s__Syntrophorhabdus aromaticivorans",
                "ani": 77.1831,
                "matched_fragments": 63,
                "total_fragments": 817,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_G;c__Syntrophorhabdia;o__Syntrophorhabdales;f__Syntrophorhabdaceae;g__Syntrophorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.59",
                "min_intra_species_ani": "99.59",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 3759482.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota_G",
        "c__Syntrophorhabdia",
        "o__Syntrophorhabdales",
        "f__Syntrophorhabdaceae",
        "g__Syntrophorhabdus",
        "s__Syntrophorhabdus sp002067585"
    ],
    "_genome_taxon": [
        "Syntrophorhabdus",
        "sp.",
        "d__Bacteria",
        "p__Desulfobacterota_G",
        "c__Syntrophorhabdia",
        "o__Syntrophorhabdales",
        "f__Syntrophorhabdaceae",
        "g__Syntrophorhabdus",
        "s__Syntrophorhabdus sp002067585",
        "Bacteria",
        "Desulfobacterota",
        "G",
        "Syntrophorhabdia",
        "Syntrophorhabdales",
        "Syntrophorhabdaceae",
        "Syntrophorhabdus",
        "Syntrophorhabdus",
        "sp002067585"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}