{ "type": "genome", "identifier": "GCA_018054425.1", "organism": "Brachymonas sp.", "title": "Brachymonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018054425.1", "bioproject": "PRJNA524094", "biosample": "SAMN18120813", "wgs_master": "JAGPJN000000000.1", "refseq_category": "na", "taxid": "1936292", "species_taxid": "1936292", "organism_name": "Brachymonas sp.", "infraspecific_name": "", "isolate": "Gw_UH_bin_13", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/17", "asm_name": "ASM1805442v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/054/425/GCA_018054425.1_ASM1805442v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-17", "dateModified": "2021-04-17", "datePublished": "2021-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Brachymonas sp." ], "sample_taxid": [ "1936292" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Greifswald" ], "sample_host_location_id": [], "data_size": "0.464 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1650607", "Number of Sequences": "206", "Longest Sequences (bp)": "42224", "N50 (bp)": "9907", "Gap Ratio (%)": "0.066642", "GCcontent (%)": "55.7", "Number of CDSs": "1242", "Average Protein Length": "308.2", "Coding Ratio (%)": "69.6", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brachymonas chironomi", "strain": "strain=DSM 19884", "accession": "GCA_000374625.1", "taxid": 491919, "species_taxid": 491919, "relation_to_type": "type", "validated": true, "ani": 76.999, "matched_fragments": 86, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax antarcticus", "strain": "strain=DSM 24876", "accession": "GCA_001955735.1", "taxid": 81479, "species_taxid": 81479, "relation_to_type": "type", "validated": true, "ani": 76.936, "matched_fragments": 62, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" 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"strain=NBRC 13960", "accession": "GCA_003568725.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 76.7807, "matched_fragments": 110, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax kalamii", "strain": "strain=KNDSW-TSA6", "accession": "GCA_002245625.1", "taxid": 2004485, "species_taxid": 2004485, "relation_to_type": "type", "validated": true, "ani": 76.6791, "matched_fragments": 67, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 76.67, "matched_fragments": 66, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira hankyongi", "strain": "strain=NY-02", "accession": "GCA_003570885.1", "taxid": 2315688, "species_taxid": 2315688, "relation_to_type": "type", "validated": true, "ani": 76.6695, "matched_fragments": 70, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serpentinimonas barnesii", "strain": "strain=H1", "accession": "GCA_000696225.1", "taxid": 1458427, "species_taxid": 1458427, "relation_to_type": "type", "validated": true, "ani": 76.6655, "matched_fragments": 77, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachymonas denitrificans", "strain": "strain=DSM 15123", "accession": "GCA_900110225.1", "taxid": 28220, "species_taxid": 28220, "relation_to_type": "type", "validated": true, "ani": 76.6655, "matched_fragments": 110, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 76.6311, "matched_fragments": 69, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 76.569, "matched_fragments": 85, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serpentinimonas maccroryi", "strain": "strain=B1", "accession": "GCA_000828915.1", "taxid": 1458426, "species_taxid": 1458426, "relation_to_type": "type", "validated": true, "ani": 76.538, "matched_fragments": 76, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans curvus", "strain": "strain=MWH-C5", "accession": "GCA_003063475.1", "taxid": 323423, "species_taxid": 323423, "relation_to_type": "type", "validated": true, "ani": 76.536, "matched_fragments": 72, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Extensimonas perlucida", "strain": "strain=HX2-24", "accession": "GCA_007655255.1", "taxid": 2590786, "species_taxid": 2590786, "relation_to_type": "type", "validated": true, "ani": 76.4318, "matched_fragments": 79, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira suum", "strain": "strain=SC1-8", "accession": "GCA_003008595.1", "taxid": 2109915, "species_taxid": 2109915, "relation_to_type": "type", "validated": true, "ani": 76.4184, "matched_fragments": 61, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas terrigena", "strain": "strain=NCTC1937", "accession": "GCA_900461435.1", "taxid": 32013, "species_taxid": 32013, "relation_to_type": "type", "validated": true, "ani": 76.2959, "matched_fragments": 61, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 76.2013, "matched_fragments": 78, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidicella baoligensis", "strain": "strain=B18-50", "accession": "GCA_013432195.1", "taxid": 2707016, "species_taxid": 2707016, "relation_to_type": "type", "validated": true, "ani": 76.1246, "matched_fragments": 61, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas avium", "strain": "strain=Sa2CVA6", "accession": "GCA_014836675.1", "taxid": 2762231, "species_taxid": 2762231, "relation_to_type": "type", "validated": true, "ani": 76.1119, "matched_fragments": 72, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax aquaticus", "strain": "strain=Gr-4", "accession": "GCA_006974105.1", "taxid": 2527691, "species_taxid": 2527691, "relation_to_type": "type", "validated": true, "ani": 76.0949, "matched_fragments": 56, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas suwonensis", "strain": "strain=EJ-4", "accession": "GCA_012844455.2", "taxid": 2606214, "species_taxid": 2606214, "relation_to_type": "type", "validated": true, "ani": 76.0331, "matched_fragments": 66, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verminephrobacter eiseniae", "strain": "strain=EF01-2", "accession": "GCA_000015565.1", "taxid": 364317, "species_taxid": 364317, "relation_to_type": "type", "validated": true, "ani": 75.8199, "matched_fragments": 57, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_017993135.1", "gtdb_species": "s__Brachymonas sp017993135", "ani": 99.4226, "matched_fragments": 412, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Brachymonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.65", "min_intra_species_ani": "99.42", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCA_017996515.1", "gtdb_species": "s__Brachymonas sp017996515", "ani": 77.717, "matched_fragments": 110, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Brachymonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903832625.1", "gtdb_species": "s__Limnohabitans sp903832625", "ani": 77.3918, "matched_fragments": 80, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.24", "min_intra_species_ani": "97.19", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903902035.1", "gtdb_species": "s__Curvibacter sp903902035", "ani": 76.943, "matched_fragments": 58, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Curvibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "97.80", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018384835.1", "gtdb_species": "s__Comamonas 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449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.08", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903928495.1", "gtdb_species": "s__UBA2334 sp903928495", "ani": 76.5231, "matched_fragments": 67, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__UBA2334", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018882835.1", "gtdb_species": "s__Limnohabitans sp018882835", "ani": 76.5021, "matched_fragments": 61, "total_fragments": 449, "gtdb_taxonomy": 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