{ "type": "genome", "identifier": "GCA_018054945.1", "organism": "Ruminococcus sp.", "title": "Ruminococcus sp.", "description": "contaminated; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018054945.1", "bioproject": "PRJNA524094", "biosample": "SAMN18120803", "wgs_master": "JAGPIO000000000.1", "refseq_category": "na", "taxid": "41978", "species_taxid": "41978", "organism_name": "Ruminococcus sp.", "infraspecific_name": "", "isolate": "Gw_UH_bin_105", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/17", "asm_name": "ASM1805494v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/054/945/GCA_018054945.1_ASM1805494v1", "excluded_from_refseq": "contaminated; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-17", "dateModified": "2021-04-17", "datePublished": "2021-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Ruminococcus sp." ], "sample_taxid": [ "41978" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Greifswald" ], "sample_host_location_id": [], "data_size": "0.409 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.5, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1417822", "Number of Sequences": "256", "Longest Sequences (bp)": "28571", "N50 (bp)": "5957", "Gap Ratio (%)": "0.077584", "GCcontent (%)": "45.2", "Number of CDSs": "1018", "Average Protein Length": "319.1", "Coding Ratio (%)": "68.7", "Number of rRNAs": "0", "Number of tRNAs": "19", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blautia massiliensis", "strain": "strain=GD9", "accession": "GCA_001487165.1", "taxid": 1737424, "species_taxid": 1737424, "relation_to_type": "type", "validated": true, "ani": 78.8477, "matched_fragments": 77, "total_fragments": 357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia intestinalis", "strain": "strain=27-44", "accession": "GCA_014297355.1", "taxid": 2763028, "species_taxid": 2763028, "relation_to_type": "type", "validated": true, "ani": 78.7249, "matched_fragments": 78, "total_fragments": 357, "ani_threshold": 95, "status": 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