{ "type": "genome", "identifier": "GCA_018055045.1", "organism": "Syntrophomonadaceae bacterium", "title": "Syntrophomonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018055045.1", "bioproject": "PRJNA524094", "biosample": "SAMN18120740", "wgs_master": "JAGPII000000000.1", "refseq_category": "na", "taxid": "2093811", "species_taxid": "2093811", "organism_name": "Syntrophomonadaceae bacterium", "infraspecific_name": "", "isolate": "Gw_SlDig_bin_95", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/17", "asm_name": "ASM1805504v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/055/045/GCA_018055045.1_ASM1805504v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-17", "dateModified": "2021-04-17", "datePublished": "2021-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Syntrophomonadaceae bacterium" ], "sample_taxid": [ "2093811" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Greifswald" ], "sample_host_location_id": [], "data_size": "0.478 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 68.75, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1647771", "Number of Sequences": "265", "Longest Sequences (bp)": "33074", "N50 (bp)": "6785", "Gap Ratio (%)": "0.084963", "GCcontent (%)": "43.7", "Number of CDSs": "1337", "Average Protein Length": "291.6", "Coding Ratio (%)": "71.0", "Number of rRNAs": "2", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 68.75, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_012729715.1", "gtdb_species": "s__UBA4844 sp012729715", "ani": 94.8699, "matched_fragments": 332, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__UBA4844", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002424365.1", "gtdb_species": "s__UBA4844 sp002424365", "ani": 85.5353, "matched_fragments": 324, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__UBA4844", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.77", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_012839665.1", "gtdb_species": "s__UBA4844 sp012839665", "ani": 82.3906, "matched_fragments": 243, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__UBA4844", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001570625.1", "gtdb_species": "s__Syntrophomonas methylbutyratica", "ani": 79.2135, "matched_fragments": 60, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__Syntrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.87", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000014725.1", "gtdb_species": "s__Syntrophomonas wolfei", "ani": 79.11, "matched_fragments": 70, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__Syntrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002398105.1", "gtdb_species": "s__UBA4844 sp002398105", "ani": 78.0651, "matched_fragments": 120, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__UBA4844", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.72", "min_intra_species_ani": "99.60", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 14, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.377, "cell_length": 0.5, "doubling_h": 0.522, "growth_tmp": 42.405, "optimum_tmp": 42.916, "optimum_ph": 7.5, "genome_size": 2522621.55, "gc_content": 50.995, "coding_genes": 2304.667, "rRNA16S_genes": 2.0, "tRNA_genes": 45.0, "gram_stain": 0.3, "sporulation": 0.166, "motility": 0.666, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.857, "aerobic_respiration": 0.142, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_B", "c__Syntrophomonadia", "o__Syntrophomonadales", "f__Syntrophomonadaceae", "g__UBA4844", "s__UBA4844 sp012729715" ], "_genome_taxon": [ "Syntrophomonadaceae", "bacterium", "d__Bacteria", "p__Bacillota_B", "c__Syntrophomonadia", "o__Syntrophomonadales", "f__Syntrophomonadaceae", "g__UBA4844", "s__UBA4844 sp012729715", "Bacteria", "Bacillota", "B", "Syntrophomonadia", "Syntrophomonadales", "Syntrophomonadaceae", "UBA4844", "UBA4844", "sp012729715" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }