{ "type": "genome", "identifier": "GCA_018055285.1", "organism": "Giesbergeria sp.", "title": "Giesbergeria sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018055285.1", "bioproject": "PRJNA524094", "biosample": "SAMN18120744", "wgs_master": "JAGPHV000000000.1", "refseq_category": "na", "taxid": "2818473", "species_taxid": "2818473", "organism_name": "Giesbergeria sp.", "infraspecific_name": "", "isolate": "Gw_SlPrim_bin_115", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/17", "asm_name": "ASM1805528v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/055/285/GCA_018055285.1_ASM1805528v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-17", "dateModified": "2021-04-17", "datePublished": "2021-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Giesbergeria sp." ], "sample_taxid": [ "2818473" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Greifswald" ], "sample_host_location_id": [], "data_size": "0.468 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 36.81, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1661874", "Number of Sequences": "285", "Longest Sequences (bp)": "30872", "N50 (bp)": "6757", "Gap Ratio (%)": "0.048138", "GCcontent (%)": "60.9", "Number of CDSs": "1291", "Average Protein Length": "302.9", "Coding Ratio (%)": "70.6", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Simplicispira psychrophila", "strain": "strain=DSM 11588", "accession": "GCA_000688255.1", "taxid": 80882, "species_taxid": 80882, "relation_to_type": "type", "validated": true, "ani": 83.6839, "matched_fragments": 363, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=NBRC 13960", "accession": "GCA_003568725.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 80.3396, "matched_fragments": 280, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=DSM 1837", "accession": "GCA_004341365.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 80.3303, "matched_fragments": 283, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax soli", "strain": "strain=DSM 25157", "accession": "GCA_900107605.1", "taxid": 592050, "species_taxid": 592050, "relation_to_type": "type", "validated": true, "ani": 78.9398, "matched_fragments": 205, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax carolinensis", "strain": "strain=NA3", "accession": "GCA_002157145.1", "taxid": 553814, "species_taxid": 553814, "relation_to_type": "type", "validated": true, "ani": 78.6983, "matched_fragments": 220, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira suum", "strain": "strain=SC1-8", "accession": "GCA_003008595.1", "taxid": 2109915, "species_taxid": 2109915, "relation_to_type": "type", "validated": true, "ani": 78.6026, "matched_fragments": 197, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira hankyongi", "strain": "strain=NY-02", "accession": "GCA_003570885.1", "taxid": 2315688, "species_taxid": 2315688, "relation_to_type": "type", "validated": true, "ani": 78.5418, "matched_fragments": 215, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 78.3295, "matched_fragments": 211, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 78.1533, "matched_fragments": 121, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus ampelinus", "strain": "strain=CECT 7646", "accession": "GCA_003217575.1", "taxid": 54067, "species_taxid": 54067, "relation_to_type": "type", "validated": true, "ani": 78.1122, "matched_fragments": 124, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus ampelinus", "strain": "strain=CFBP 1192", "accession": "GCA_024832295.1", "taxid": 54067, "species_taxid": 54067, "relation_to_type": "type", "validated": true, "ani": 78.08, "matched_fragments": 125, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verminephrobacter eiseniae", "strain": "strain=EF01-2", "accession": "GCA_000015565.1", "taxid": 364317, "species_taxid": 364317, "relation_to_type": "type", "validated": true, "ani": 77.9987, "matched_fragments": 159, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas aquatica", "strain": "strain=CLN-1", "accession": "GCA_007556585.1", "taxid": 247482, "species_taxid": 247482, "relation_to_type": "type", "validated": true, "ani": 77.0858, "matched_fragments": 113, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 36.81, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017987055.1", "gtdb_species": "s__Giesbergeria sp017987055", "ani": 98.9971, "matched_fragments": 313, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "99.05", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.76", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_017988165.1", "gtdb_species": "s__Giesbergeria sp017988165", "ani": 86.3107, "matched_fragments": 296, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000688255.1", "gtdb_species": "s__Giesbergeria psychrophila", "ani": 83.6839, "matched_fragments": 363, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004341365.1", "gtdb_species": "s__Giesbergeria metamorpha", "ani": 80.3568, "matched_fragments": 281, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017998735.1", "gtdb_species": "s__Giesbergeria sp017998735", "ani": 79.8042, "matched_fragments": 186, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012932145.1", "gtdb_species": "s__Giesbergeria sp012932145", "ani": 79.7931, "matched_fragments": 267, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.72", "min_intra_species_ani": "98.72", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002176815.1", "gtdb_species": "s__Acidovorax sp002176815", "ani": 79.2068, "matched_fragments": 222, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "97.20", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900107605.1", "gtdb_species": "s__Acidovorax soli", "ani": 78.9398, "matched_fragments": 205, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.72", "min_intra_species_ani": "95.72", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003604195.1", "gtdb_species": "s__Giesbergeria lacusdiani", "ani": 78.7134, "matched_fragments": 235, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002377855.1", "gtdb_species": "s__Acidovorax delafieldii_A", "ani": 78.1814, "matched_fragments": 164, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017368815.1", "gtdb_species": "s__Comamonas denitrificans_A", "ani": 77.8693, "matched_fragments": 154, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.17", "min_intra_species_ani": "97.65", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_013297865.1", "gtdb_species": "s__JAAFIP01 sp013297865", "ani": 76.9431, "matched_fragments": 111, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JAAFIP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.096, "cell_length": null, "doubling_h": null, "growth_tmp": 28.133, "optimum_tmp": 29.0, "optimum_ph": 7.0, "genome_size": 3420562.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Giesbergeria", "s__Giesbergeria sp017987055" ], "_genome_taxon": [ "Giesbergeria", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Giesbergeria", "s__Giesbergeria sp017987055", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Giesbergeria", "Giesbergeria", "sp017987055" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }