{
    "type": "genome",
    "identifier": "GCA_018055385.1",
    "organism": "Parabacteroides sp.",
    "title": "Parabacteroides sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018055385.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18120811",
        "wgs_master": "JAGPHT000000000.1",
        "refseq_category": "na",
        "taxid": "1869337",
        "species_taxid": "1869337",
        "organism_name": "Parabacteroides sp.",
        "infraspecific_name": "",
        "isolate": "Gw_UH_bin_126",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/17",
        "asm_name": "ASM1805538v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/055/385/GCA_018055385.1_ASM1805538v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-17",
    "dateModified": "2021-04-17",
    "datePublished": "2021-04-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Parabacteroides sp."
        ],
        "sample_taxid": [
            "1869337"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Greifswald"
        ],
        "sample_host_location_id": [],
        "data_size": "0.867 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.0,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3001763",
        "Number of Sequences": "292",
        "Longest Sequences (bp)": "66590",
        "N50 (bp)": "12898",
        "Gap Ratio (%)": "0.106604",
        "GCcontent (%)": "46.3",
        "Number of CDSs": "2090",
        "Average Protein Length": "376.3",
        "Coding Ratio (%)": "78.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Parabacteroides merdae",
                "strain": "strain=ATCC 43184",
                "accession": "GCA_000154105.1",
                "taxid": 46503,
                "species_taxid": 46503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.474,
                "matched_fragments": 823,
                "total_fragments": 860,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parabacteroides merdae",
                "strain": "strain=ATCC 43184",
                "accession": "GCA_025151215.1",
                "taxid": 46503,
                "species_taxid": 46503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.4329,
                "matched_fragments": 826,
                "total_fragments": 860,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parabacteroides merdae",
                "strain": "strain=NCTC13052",
                "accession": "GCA_900445495.1",
                "taxid": 46503,
                "species_taxid": 46503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.4252,
                "matched_fragments": 830,
                "total_fragments": 860,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parabacteroides johnsonii",
                "strain": "strain=DSM 18315",
                "accession": "GCA_025151045.1",
                "taxid": 387661,
                "species_taxid": 387661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1423,
                "matched_fragments": 741,
                "total_fragments": 860,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides johnsonii",
                "strain": "strain=DSM 18315",
                "accession": "GCA_000156495.1",
                "taxid": 387661,
                "species_taxid": 387661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1342,
                "matched_fragments": 740,
                "total_fragments": 860,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola faecalis",
                "strain": "strain=FXJYN30E22",
                "accession": "GCA_021730445.1",
                "taxid": 2786956,
                "species_taxid": 2786956,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.045,
                "matched_fragments": 54,
                "total_fragments": 860,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 75.0,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000154105.1",
                "gtdb_species": "s__Parabacteroides merdae",
                "ani": 99.474,
                "matched_fragments": 823,
                "total_fragments": 860,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 85,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000156495.1",
                "gtdb_species": "s__Parabacteroides johnsonii",
                "ani": 91.1342,
                "matched_fragments": 740,
                "total_fragments": 860,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "96.67",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_014287585.1",
                "gtdb_species": "s__Parabacteroides sp014287585",
                "ani": 89.8062,
                "matched_fragments": 748,
                "total_fragments": 860,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900155425.1",
                "gtdb_species": "s__Parabacteroides massiliensis",
                "ani": 88.4394,
                "matched_fragments": 679,
                "total_fragments": 860,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "99.33",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900760525.1",
                "gtdb_species": "s__Parabacteroides sp900760525",
                "ani": 87.6277,
                "matched_fragments": 670,
                "total_fragments": 860,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.93",
                "min_intra_species_ani": "98.92",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_910577325.1",
                "gtdb_species": "s__Parabacteroides sp910577325",
                "ani": 87.0874,
                "matched_fragments": 639,
                "total_fragments": 860,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017937385.1",
                "gtdb_species": "s__Parabacteroides sp017937385",
                "ani": 84.3563,
                "matched_fragments": 581,
                "total_fragments": 860,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.047,
        "cell_length": 0.432,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.8,
        "optimum_ph": 7.25,
        "genome_size": 5037952.719,
        "gc_content": 44.545,
        "coding_genes": 3853.0,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 82.0,
        "gram_stain": 0.166,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Tannerellaceae",
        "g__Parabacteroides",
        "s__Parabacteroides merdae"
    ],
    "_genome_taxon": [
        "Parabacteroides",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Tannerellaceae",
        "g__Parabacteroides",
        "s__Parabacteroides merdae",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Tannerellaceae",
        "Parabacteroides",
        "Parabacteroides",
        "merdae"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}