{ "type": "genome", "identifier": "GCA_018057665.1", "organism": "Gemmatimonadaceae bacterium", "title": "Gemmatimonadaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018057665.1", "bioproject": "PRJNA524094", "biosample": "SAMN18120618", "wgs_master": "JAGPDH000000000.1", "refseq_category": "na", "taxid": "2026741", "species_taxid": "2026741", "organism_name": "Gemmatimonadaceae bacterium", "infraspecific_name": "", "isolate": "Gw_SlAct_bin_376", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/17", "asm_name": "ASM1805766v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/057/665/GCA_018057665.1_ASM1805766v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-17", "dateModified": "2021-04-17", "datePublished": "2021-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmatimonadaceae bacterium" ], "sample_taxid": [ "2026741" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Greifswald" ], "sample_host_location_id": [], "data_size": "0.794 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 67.76, "contamination": 8.05, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2846884", "Number of Sequences": "700", "Longest Sequences (bp)": "22327", "N50 (bp)": "3994", "Gap Ratio (%)": "0.031965", "GCcontent (%)": "69.1", "Number of CDSs": "1780", "Average Protein Length": "314.8", "Coding Ratio (%)": "59.0", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gemmatimonas phototrophica", "strain": "strain=AP64", "accession": "GCA_000695095.2", "taxid": 1379270, "species_taxid": 1379270, "relation_to_type": "type", "validated": true, "ani": 77.0489, "matched_fragments": 58, "total_fragments": 583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatimonas groenlandica", "strain": "strain=TET16", "accession": "GCA_013004105.1", "taxid": 2732249, "species_taxid": 2732249, "relation_to_type": "type", "validated": true, "ani": 76.7978, "matched_fragments": 82, "total_fragments": 583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatirosa kalamazoonensis", "strain": "strain=KBS708", "accession": "GCA_000522985.1", "taxid": 861299, "species_taxid": 861299, "relation_to_type": "type", "validated": true, "ani": 76.6803, "matched_fragments": 185, "total_fragments": 583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CECT 8660", "accession": "GCA_014198875.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.6213, "matched_fragments": 65, "total_fragments": 583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CB-286315", "accession": "GCA_013000925.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.5592, "matched_fragments": 62, "total_fragments": 583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=DSM 29007", "accession": "GCA_014202995.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.5452, "matched_fragments": 63, "total_fragments": 583, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 67.76, "contamination": 8.05, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016719105.1", "gtdb_species": "s__SCN-70-22 sp016719105", "ani": 98.982, "matched_fragments": 536, "total_fragments": 583, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__SCN-70-22", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCA_001724275.1", "gtdb_species": 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"SCN-70-22", "sp016719105" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }