{
    "type": "genome",
    "identifier": "GCA_018059145.1",
    "organism": "Vitreoscilla sp.",
    "title": "Vitreoscilla sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018059145.1",
        "bioproject": "PRJNA524094",
        "biosample": "SAMN18120495",
        "wgs_master": "JAGOYO000000000.1",
        "refseq_category": "na",
        "taxid": "60",
        "species_taxid": "60",
        "organism_name": "Vitreoscilla sp.",
        "infraspecific_name": "",
        "isolate": "Gw_Inlet_bin_92",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/17",
        "asm_name": "ASM1805914v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/059/145/GCA_018059145.1_ASM1805914v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-17",
    "dateModified": "2021-04-17",
    "datePublished": "2021-04-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vitreoscilla sp."
        ],
        "sample_taxid": [
            "60"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Greifswald"
        ],
        "sample_host_location_id": [],
        "data_size": "0.689 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 50.0,
        "contamination": 8.33,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2430471",
        "Number of Sequences": "442",
        "Longest Sequences (bp)": "58571",
        "N50 (bp)": "5810",
        "Gap Ratio (%)": "0.033327",
        "GCcontent (%)": "50.4",
        "Number of CDSs": "2020",
        "Average Protein Length": "281.7",
        "Coding Ratio (%)": "70.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Vitreoscilla massiliensis",
                "strain": "strain=SN4",
                "accession": "GCA_022870925.1",
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                "species_taxid": 1689272,
                "relation_to_type": "type",
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                "matched_fragments": 464,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vitreoscilla massiliensis",
                "strain": "strain=SN6",
                "accession": "GCA_001457815.1",
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                "species_taxid": 1689272,
                "relation_to_type": "type",
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                "ani": 85.2885,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vitreoscilla stercoraria",
                "strain": "strain=DSM 513",
                "accession": "GCA_000382305.1",
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                "relation_to_type": "type",
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                "ani": 78.8128,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vitreoscilla stercoraria",
                "strain": "strain=SAG 1488-6",
                "accession": "GCA_022870945.1",
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                "species_taxid": 61,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7532,
                "matched_fragments": 252,
                "total_fragments": 588,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Uruburuella testudinis",
                "strain": "strain=CCUG 63373m",
                "accession": "GCA_022870865.1",
                "taxid": 1282863,
                "species_taxid": 1282863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1405,
                "matched_fragments": 53,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Uruburuella suis",
                "strain": "strain=DSM 17474",
                "accession": "GCA_004341385.1",
                "taxid": 252130,
                "species_taxid": 252130,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6598,
                "matched_fragments": 74,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Uruburuella suis",
                "strain": "strain=1258/02",
                "accession": "GCA_022870845.1",
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                "species_taxid": 252130,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6428,
                "matched_fragments": 73,
                "total_fragments": 588,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        },
        "gtdb_result": [
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                "accession": "GCF_001457815.1",
                "gtdb_species": "s__Vitreoscilla massiliensis",
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                "matched_fragments": 462,
                "total_fragments": 588,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Vitreoscilla",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            },
            {
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                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009671065.1",
                "gtdb_species": "s__Neisseria brasiliensis",
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                "total_fragments": 588,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.38",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_017987415.1",
                "gtdb_species": "s__JAGNPU01 sp017987415",
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                "matched_fragments": 56,
                "total_fragments": 588,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__JAGNPU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": null,
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        "genome_size": 3184426.333,
        "gc_content": 63.492,
        "coding_genes": 3487.5,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 57.0,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Neisseriaceae",
        "g__Vitreoscilla",
        "s__"
    ],
    "_genome_taxon": [
        "Vitreoscilla",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Neisseriaceae",
        "g__Vitreoscilla",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Neisseriaceae",
        "Vitreoscilla",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}