{ "type": "genome", "identifier": "GCA_018062225.1", "organism": "Thermoanaerobaculia bacterium", "title": "Thermoanaerobaculia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018062225.1", "bioproject": "PRJNA524094", "biosample": "SAMN18120342", "wgs_master": "JAGOSR000000000.1", "refseq_category": "na", "taxid": "2651171", "species_taxid": "2651171", "organism_name": "Thermoanaerobaculia bacterium", "infraspecific_name": "", "isolate": "Gw_Eff_bin_338", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/17", "asm_name": "ASM1806222v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/062/225/GCA_018062225.1_ASM1806222v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-17", "dateModified": "2021-04-17", "datePublished": "2021-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermoanaerobaculia bacterium" ], "sample_taxid": [ "2651171" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Greifswald" ], "sample_host_location_id": [], "data_size": "1.305 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.77, "contamination": 5.09, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4748847", "Number of Sequences": "603", "Longest Sequences (bp)": "47684", "N50 (bp)": "10127", "Gap Ratio (%)": "0.006317", "GCcontent (%)": "69.1", "Number of CDSs": "3503", "Average Protein Length": "341.8", "Coding Ratio (%)": "75.6", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ciceribacter ferrooxidans", "strain": "strain=F8825", "accession": "GCA_004137355.1", "taxid": 2509717, "species_taxid": 2509717, "relation_to_type": "type", "validated": true, "ani": 75.2319, "matched_fragments": 60, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=NBRC 103043", "accession": "GCA_002091555.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 75.0536, "matched_fragments": 109, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=RLD-1", "accession": "GCA_900187975.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 74.9902, "matched_fragments": 108, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=CCM 7361", "accession": "GCA_900099945.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 74.9888, "matched_fragments": 108, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 74.9682, "matched_fragments": 109, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Persicimonas caeni", "strain": "strain=YN101", "accession": "GCA_007993775.1", "taxid": 2292766, "species_taxid": 2292766, "relation_to_type": "type", "validated": true, "ani": 74.9554, "matched_fragments": 111, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Persicimonas caeni", "strain": "strain=YN101", "accession": "GCA_006517175.1", "taxid": 2292766, "species_taxid": 2292766, "relation_to_type": "type", "validated": true, "ani": 74.9501, "matched_fragments": 112, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibius marinus", "strain": "strain=NBU2595", "accession": "GCA_014925385.1", "taxid": 2762760, "species_taxid": 2762760, "relation_to_type": "type", "validated": true, "ani": 74.9155, "matched_fragments": 99, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, "species_taxid": 2734909, "relation_to_type": "type", "validated": true, "ani": 74.9073, "matched_fragments": 116, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas carbonaria", "strain": "strain=CIP 111764", "accession": "GCA_904061905.1", "taxid": 2762745, "species_taxid": 2762745, "relation_to_type": "type", "validated": true, "ani": 74.901, "matched_fragments": 79, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 74.8865, "matched_fragments": 68, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 74.8543, "matched_fragments": 69, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium tamlense", "strain": "strain=DSM 19087", "accession": "GCA_013408555.1", "taxid": 375541, "species_taxid": 375541, "relation_to_type": "type", "validated": true, "ani": 74.7757, "matched_fragments": 85, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frankia asymbiotica", "strain": "strain=NRRL B-16386", "accession": "GCA_001983105.1", "taxid": 1834516, "species_taxid": 1834516, "relation_to_type": "type", "validated": true, "ani": 74.7485, "matched_fragments": 188, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia symbiotica", "strain": "strain=JPY-345", "accession": "GCA_002934455.1", "taxid": 863227, "species_taxid": 863227, "relation_to_type": "type", "validated": true, "ani": 74.7425, "matched_fragments": 65, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.77, "contamination": 5.09, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCA_018057705.1", "gtdb_species": "s__JAGPDF01 sp018057705", "ani": 99.7339, "matched_fragments": 1203, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__UBA5704;g__JAGPDF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.73", "min_intra_species_ani": "99.73", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_017998715.1", "gtdb_species": "s__JAGPDF01 sp017998715", "ani": 83.7537, "matched_fragments": 705, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__UBA5704;g__JAGPDF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014584695.1", "gtdb_species": "s__JACTMI01 sp014584695", "ani": 78.2379, "matched_fragments": 474, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__UBA5704;g__JACTMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011525905.1", "gtdb_species": "s__JACTMI01 sp011525905", "ani": 78.0752, "matched_fragments": 433, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__UBA5704;g__JACTMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017860005.1", "gtdb_species": "s__JACTMI01 sp017860005", "ani": 78.0447, "matched_fragments": 399, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__UBA5704;g__JACTMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016699405.1", "gtdb_species": "s__JAAYLR01 sp016699405", "ani": 77.5839, "matched_fragments": 386, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__UBA5704;g__JAAYLR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012521815.1", "gtdb_species": "s__JAAYLR01 sp012521815", "ani": 77.0464, "matched_fragments": 251, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__UBA5704;g__JAAYLR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.78", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_002420005.1", "gtdb_species": "s__UBA5704 sp002420005", "ani": 76.5918, "matched_fragments": 285, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__UBA5704;g__UBA5704", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014925385.1", "gtdb_species": "s__WHTV01 sp014925385", "ani": 74.9112, "matched_fragments": 100, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Kiloniellaceae;g__WHTV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Acidobacteriota", "c__Thermoanaerobaculia", "o__Multivoradales", "f__UBA5704", "g__JAGPDF01", "s__JAGPDF01 sp018057705" ], "_genome_taxon": [ "Thermoanaerobaculia", "bacterium", "d__Bacteria", "p__Acidobacteriota", "c__Thermoanaerobaculia", "o__Multivoradales", "f__UBA5704", "g__JAGPDF01", "s__JAGPDF01 sp018057705", "Bacteria", "Acidobacteriota", "Thermoanaerobaculia", "Multivoradales", "UBA5704", "JAGPDF01", "JAGPDF01", "sp018057705" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }