{ "type": "genome", "identifier": "GCA_018063385.1", "organism": "Opitutaceae bacterium", "title": "Opitutaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018063385.1", "bioproject": "PRJNA524094", "biosample": "SAMN18120570", "wgs_master": "JAGPBL000000000.1", "refseq_category": "na", "taxid": "2006848", "species_taxid": "2006848", "organism_name": "Opitutaceae bacterium", "infraspecific_name": "", "isolate": "Gw_SlAct_bin_171", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/17", "asm_name": "ASM1806338v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/063/385/GCA_018063385.1_ASM1806338v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-17", "dateModified": "2021-04-17", "datePublished": "2021-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Opitutaceae bacterium" ], "sample_taxid": [ "2006848" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Greifswald" ], "sample_host_location_id": [], "data_size": "0.849 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 54.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2988106", "Number of Sequences": "326", "Longest Sequences (bp)": "44767", "N50 (bp)": "12790", "Gap Ratio (%)": "0.017402", "GCcontent (%)": "62.1", "Number of CDSs": "2385", "Average Protein Length": "328.9", "Coding Ratio (%)": "78.8", "Number of rRNAs": "1", "Number of tRNAs": "32", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nibricoccus aquaticus", "strain": "strain=HZ-65", "accession": "GCA_002310495.1", "taxid": 2576891, "species_taxid": 2576891, "relation_to_type": "type", "validated": true, "ani": 77.8162, "matched_fragments": 148, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rariglobus hedericola", "strain": "strain=53C-WASEF", "accession": "GCA_007559335.1", "taxid": 2597822, "species_taxid": 2597822, "relation_to_type": "type", "validated": true, "ani": 77.5951, "matched_fragments": 148, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Opitutus terrae", "strain": "strain=PB90-1", "accession": "GCA_000019965.1", "taxid": 107709, "species_taxid": 107709, "relation_to_type": "type", "validated": true, "ani": 77.3725, "matched_fragments": 161, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cephaloticoccus primus", "strain": "strain=CAG34", "accession": "GCA_001580015.1", "taxid": 1548207, "species_taxid": 1548207, "relation_to_type": "type", "validated": true, "ani": 77.3042, "matched_fragments": 106, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geminisphaera colitermitum", "strain": "strain=TAV2", "accession": "GCA_000171235.2", "taxid": 1148786, "species_taxid": 1148786, "relation_to_type": "type", "validated": true, "ani": 77.0019, "matched_fragments": 109, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ereboglobus luteus", "strain": "strain=Ho45", "accession": "GCA_003096195.1", "taxid": 1796921, "species_taxid": 1796921, "relation_to_type": "type", "validated": true, "ani": 76.8128, "matched_fragments": 102, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 54.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017988885.1", "gtdb_species": "s__UBA2377 sp017988885", "ani": 99.2661, "matched_fragments": 625, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__UBA2377", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.75", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_002344205.1", "gtdb_species": "s__UBA2377 sp002344205", "ani": 79.3392, "matched_fragments": 341, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__UBA2377", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016715765.1", "gtdb_species": "s__UBA2377 sp016715765", "ani": 79.2587, "matched_fragments": 371, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__UBA2377", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016795565.1", "gtdb_species": "s__Lacunisphaera sp016795565", "ani": 78.8841, "matched_fragments": 190, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903855985.1", "gtdb_species": "s__Opi-474 sp903855985", "ani": 78.7822, "matched_fragments": 277, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903872505.1", "gtdb_species": "s__Opi-474 sp903872505", "ani": 78.7241, "matched_fragments": 290, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903859715.1", "gtdb_species": "s__Opi-474 sp903859715", "ani": 78.664, "matched_fragments": 256, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_903952145.1", "gtdb_species": "s__UBA2377 sp903952145", "ani": 78.6413, "matched_fragments": 331, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__UBA2377", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.61", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903877135.1", "gtdb_species": "s__Opitutus sp903877135", "ani": 78.4964, "matched_fragments": 252, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opitutus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903862955.1", "gtdb_species": "s__Opi-474 sp903862955", "ani": 78.456, "matched_fragments": 276, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_903881475.1", "gtdb_species": "s__Opi-474 sp903881475", "ani": 78.3812, "matched_fragments": 260, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.50", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_903825285.1", "gtdb_species": "s__Opi-474 sp903825285", "ani": 78.2655, "matched_fragments": 255, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "99.55", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCA_016794785.1", "gtdb_species": "s__ER46 sp016794785", "ani": 78.1451, "matched_fragments": 204, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903948415.1", "gtdb_species": "s__CAITWF01 sp903948415", "ani": 78.1206, "matched_fragments": 204, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__CAITWF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009695305.1", "gtdb_species": "s__CAITWF01 sp009695305", "ani": 78.1041, "matched_fragments": 185, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__CAITWF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002288455.1", "gtdb_species": "s__ER46 sp002288455", "ani": 77.9591, "matched_fragments": 166, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016217545.1", "gtdb_species": "s__Didemnitutus sp016217545", "ani": 77.9442, "matched_fragments": 173, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Didemnitutus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014376585.1", "gtdb_species": "s__Tous-C4FEB sp014376585", "ani": 77.843, "matched_fragments": 188, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016235555.1", "gtdb_species": "s__ER46 sp016235555", "ani": 77.6893, "matched_fragments": 233, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001580015.1", "gtdb_species": "s__Cephaloticoccus primus", "ani": 77.3289, "matched_fragments": 105, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Cephaloticoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016793535.1", "gtdb_species": "s__ER46 sp016793535", "ani": 77.3157, "matched_fragments": 146, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005792355.1", "gtdb_species": "s__ER46 sp005792355", "ani": 77.2037, "matched_fragments": 157, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016209255.1", "gtdb_species": "s__ER46 sp016209255", "ani": 77.027, "matched_fragments": 142, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.248, "cell_length": -0.398, "doubling_h": null, "growth_tmp": 36.5, "optimum_tmp": null, "optimum_ph": 7.75, "genome_size": 5272321.702, "gc_content": 65.092, "coding_genes": 4656.944, "rRNA16S_genes": 1.0, "tRNA_genes": 51.333, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.5, "anaerobic_respiration": 0.25, "aerobic_respiration": 0.25, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__Opitutaceae", "g__UBA2377", "s__UBA2377 sp017988885" ], "_genome_taxon": [ "Opitutaceae", "bacterium", "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__Opitutaceae", "g__UBA2377", "s__UBA2377 sp017988885", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Opitutales", "Opitutaceae", "UBA2377", "UBA2377", "sp017988885" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }