{ "type": "genome", "identifier": "GCA_018067085.1", "organism": "Thalassolituus oleivorans", "title": "Thalassolituus oleivorans", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Calgary", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018067085.1", "bioproject": "PRJNA686385", "biosample": "SAMN18558042", "wgs_master": "JAGPVJ000000000.1", "refseq_category": "na", "taxid": "187493", "species_taxid": "187493", "organism_name": "Thalassolituus oleivorans", "infraspecific_name": "", "isolate": "640_Coassembly_bin.8", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/17", "asm_name": "ASM1806708v1", "submitter": "University of Calgary", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/067/085/GCA_018067085.1_ASM1806708v1", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-17", "dateModified": "2021-04-17", "datePublished": "2021-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Thalassolituus oleivorans" ], "sample_taxid": [ "187493" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Labrador Sea", "University of Calgary" ], "sample_host_location_id": [], "data_size": "1.053 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 4.0, "max": 4.0 }, "completeness": 58.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3653383", "Number of Sequences": "373", "Longest Sequences (bp)": "62744", "N50 (bp)": "13246", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.6", "Number of CDSs": "2993", "Average Protein Length": "324.2", "Coding Ratio (%)": "79.7", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thalassolituus oleivorans", "strain": "strain=MIL-1", "accession": "GCA_000355675.1", "taxid": 187493, "species_taxid": 187493, "relation_to_type": "type", "validated": true, "ani": 98.0287, "matched_fragments": 884, "total_fragments": 1040, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thalassolituus marinus", "strain": "strain=IMCC1826", "accession": "GCA_020320395.1", "taxid": 671053, "species_taxid": 671053, "relation_to_type": "type", "validated": true, "ani": 77.3422, "matched_fragments": 121, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacter kriegii", "strain": "strain=DSM 6294", "accession": "GCA_000422845.1", "taxid": 64972, "species_taxid": 64972, "relation_to_type": "type", "validated": true, "ani": 76.6402, "matched_fragments": 76, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacter mangrovi", "strain": "strain=SM2-42", "accession": "GCA_019740315.1", "taxid": 2862510, "species_taxid": 2862510, "relation_to_type": "type", "validated": true, "ani": 76.4172, "matched_fragments": 79, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 58.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000355675.1", "gtdb_species": "s__Thalassolituus oleivorans", "ani": 98.0506, "matched_fragments": 883, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Thalassolituus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "98.03", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.78", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCA_002733205.1", "gtdb_species": "s__UBA2009 sp002733205", "ani": 78.0598, "matched_fragments": 129, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__UBA2009", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.83", "min_intra_species_ani": "96.83", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002314145.1", "gtdb_species": "s__UBA2009 sp002314145", "ani": 77.2662, "matched_fragments": 93, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__UBA2009", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_007785795.1", "gtdb_species": "s__UBA2009 sp002335285", "ani": 77.2416, "matched_fragments": 156, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__UBA2009", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_002733645.1", "gtdb_species": "s__Oleibacter sp002733645", "ani": 77.2343, "matched_fragments": 156, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oleibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.97", "min_intra_species_ani": "97.97", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014859445.1", "gtdb_species": "s__Bacterioplanes sp014859445", "ani": 76.8934, "matched_fragments": 95, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Bacterioplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_006212115.1", "gtdb_species": "s__Oleibacter sp006212115", "ani": 76.7964, "matched_fragments": 86, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oleibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002708475.1", "gtdb_species": "s__Oleispira sp002708475", "ani": 76.7114, "matched_fragments": 61, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oleispira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000422845.1", "gtdb_species": "s__Oceanobacter kriegii", "ani": 76.6692, "matched_fragments": 75, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oceanobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002237535.1", "gtdb_species": "s__Bacterioplanes sanyensis_A", "ani": 76.6408, "matched_fragments": 87, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Bacterioplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002298335.1", "gtdb_species": "s__Oleibacter sp002298335", "ani": 76.4982, "matched_fragments": 74, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oleibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 25.0, "optimum_tmp": 20.25, "optimum_ph": 8.0, "genome_size": 3865874.333, "gc_content": 46.605, "coding_genes": 3479.0, "rRNA16S_genes": 3.75, "tRNA_genes": 49.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 1.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__DSM-6294", "g__Thalassolituus", "s__Thalassolituus oleivorans" ], "_genome_taxon": [ "Thalassolituus", "oleivorans", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__DSM-6294", "g__Thalassolituus", "s__Thalassolituus oleivorans", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "DSM-6294", "Thalassolituus", "Thalassolituus", "oleivorans" ], "_meo": [ { "id": "MEO_0000066", "label": "sediment" }, { "id": "MEO_0000327", "label": "petroleum" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }