{
    "type": "genome",
    "identifier": "GCA_018067285.1",
    "organism": "Porticoccus sp.",
    "title": "Porticoccus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Calgary",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018067285.1",
        "bioproject": "PRJNA686385",
        "biosample": "SAMN18558029",
        "wgs_master": "JAGPUR000000000.1",
        "refseq_category": "na",
        "taxid": "2024853",
        "species_taxid": "2024853",
        "organism_name": "Porticoccus sp.",
        "infraspecific_name": "",
        "isolate": "640_Coassembly_bin.10",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/17",
        "asm_name": "ASM1806728v1",
        "submitter": "University of Calgary",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/067/285/GCA_018067285.1_ASM1806728v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-17",
    "dateModified": "2021-04-17",
    "datePublished": "2021-04-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Porticoccus sp."
        ],
        "sample_taxid": [
            "2024853"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Labrador Sea",
            "University of Calgary"
        ],
        "sample_host_location_id": [],
        "data_size": "0.678 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 4.0,
            "max": 4.0
        },
        "completeness": 95.83,
        "contamination": 3.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2349715",
        "Number of Sequences": "164",
        "Longest Sequences (bp)": "106363",
        "N50 (bp)": "19966",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.3",
        "Number of CDSs": "2052",
        "Average Protein Length": "310.4",
        "Coding Ratio (%)": "81.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "31",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Porticoccus hydrocarbonoclasticus",
                "strain": "strain=MCTG13d",
                "accession": "GCA_000744735.1",
                "taxid": 1073414,
                "species_taxid": 1073414,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4745,
                "matched_fragments": 74,
                "total_fragments": 700,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 3.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018066715.1",
                "gtdb_species": "s__Porticoccus sp018066715",
                "ani": 99.8752,
                "matched_fragments": 652,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__Porticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_011049795.1",
                "gtdb_species": "s__Porticoccus sp011049795",
                "ani": 90.1732,
                "matched_fragments": 445,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__Porticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002390285.1",
                "gtdb_species": "s__Porticoccus sp002390285",
                "ani": 81.754,
                "matched_fragments": 451,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__Porticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.48",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_002746985.1",
                "gtdb_species": "s__Porticoccus sp002746985",
                "ani": 78.8866,
                "matched_fragments": 243,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__Porticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "97.07",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002367235.1",
                "gtdb_species": "s__Porticoccus sp002367235",
                "ani": 78.4071,
                "matched_fragments": 214,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__Porticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002733125.1",
                "gtdb_species": "s__Porticoccus sp002733125",
                "ani": 76.6681,
                "matched_fragments": 63,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__Porticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000744735.1",
                "gtdb_species": "s__Porticoccus hydrocarbonoclasticus",
                "ani": 76.4745,
                "matched_fragments": 74,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__Porticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.31,
        "cell_length": -0.31,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 22.5,
        "optimum_ph": 7.5,
        "genome_size": 2474654.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.5,
        "coccus_cell_shape": 0.5,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Porticoccaceae",
        "g__Porticoccus",
        "s__Porticoccus sp018066715"
    ],
    "_genome_taxon": [
        "Porticoccus",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Porticoccaceae",
        "g__Porticoccus",
        "s__Porticoccus sp018066715",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "Porticoccaceae",
        "Porticoccus",
        "Porticoccus",
        "sp018066715"
    ],
    "_meo": [
        {
            "id": "MEO_0000066",
            "label": "sediment"
        },
        {
            "id": "MEO_0000327",
            "label": "petroleum"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}