{
    "type": "genome",
    "identifier": "GCA_018067325.1",
    "organism": "Amphritea sp.",
    "title": "Amphritea sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Calgary",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018067325.1",
        "bioproject": "PRJNA686385",
        "biosample": "SAMN18558020",
        "wgs_master": "JAGPUU000000000.1",
        "refseq_category": "na",
        "taxid": "1872502",
        "species_taxid": "1872502",
        "organism_name": "Amphritea sp.",
        "infraspecific_name": "",
        "isolate": "640_Coassembly_bin.18",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/17",
        "asm_name": "ASM1806732v1",
        "submitter": "University of Calgary",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/067/325/GCA_018067325.1_ASM1806732v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-17",
    "dateModified": "2021-04-17",
    "datePublished": "2021-04-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Amphritea sp."
        ],
        "sample_taxid": [
            "1872502"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Labrador Sea",
            "University of Calgary"
        ],
        "sample_host_location_id": [],
        "data_size": "0.954 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 4.0,
            "max": 4.0
        },
        "completeness": 95.83,
        "contamination": 8.33,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3301033",
        "Number of Sequences": "486",
        "Longest Sequences (bp)": "30554",
        "N50 (bp)": "7876",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.6",
        "Number of CDSs": "2669",
        "Average Protein Length": "295.0",
        "Coding Ratio (%)": "71.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Amphritea japonica",
                "strain": "strain=JCM 14782",
                "accession": "GCA_024347275.1",
                "taxid": 452627,
                "species_taxid": 452627,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5077,
                "matched_fragments": 671,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphritea japonica",
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                "accession": "GCA_016592435.1",
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                "species_taxid": 452627,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4792,
                "matched_fragments": 665,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphritea japonica",
                "strain": "strain=JAMM 1866",
                "accession": "GCA_000381785.1",
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                "species_taxid": 452627,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3953,
                "matched_fragments": 668,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphritea balenae",
                "strain": "strain=JAMM 1525",
                "accession": "GCA_003858655.1",
                "taxid": 452629,
                "species_taxid": 452629,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6494,
                "matched_fragments": 292,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphritea balenae",
                "strain": "strain=JCM 14781",
                "accession": "GCA_014646975.1",
                "taxid": 452629,
                "species_taxid": 452629,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6423,
                "matched_fragments": 289,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphritea pacifica",
                "strain": "strain=ZJ14W",
                "accession": "GCA_016924145.1",
                "taxid": 2811233,
                "species_taxid": 2811233,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5013,
                "matched_fragments": 369,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphritea atlantica",
                "strain": "strain=DSM 18887",
                "accession": "GCA_900111095.1",
                "taxid": 355243,
                "species_taxid": 355243,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3989,
                "matched_fragments": 382,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphritea opalescens",
                "strain": "strain=ANRC-JH13",
                "accession": "GCA_003957515.1",
                "taxid": 2490544,
                "species_taxid": 2490544,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2422,
                "matched_fragments": 290,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphritea ceti",
                "strain": "strain=KCTC 42154",
                "accession": "GCA_024347215.1",
                "taxid": 1524258,
                "species_taxid": 1524258,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5953,
                "matched_fragments": 117,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neptuniibacter marinus",
                "strain": "strain=ATR 1.1",
                "accession": "GCA_001597725.1",
                "taxid": 1806670,
                "species_taxid": 1806670,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2812,
                "matched_fragments": 66,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacterium stanieri",
                "strain": "strain=DSM 7027",
                "accession": "GCA_900155945.1",
                "taxid": 49186,
                "species_taxid": 49186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9733,
                "matched_fragments": 77,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacterium arenosum",
                "strain": "strain=CAU 1594",
                "accession": "GCA_019795155.1",
                "taxid": 2862496,
                "species_taxid": 2862496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6842,
                "matched_fragments": 62,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 8.33,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018067325.1",
                "gtdb_species": "s__Amphritea sp018067325",
                "ani": 100.0,
                "matched_fragments": 843,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "99.51",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "conclusive"
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            {
                "accession": "GCA_016744155.1",
                "gtdb_species": "s__Amphritea sp016744155",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016592435.1",
                "gtdb_species": "s__Amphritea japonica",
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                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003858655.1",
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                "matched_fragments": 292,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018223185.1",
                "gtdb_species": "s__Amphritea sp018223185",
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                "matched_fragments": 379,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea",
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                "mean_intra_species_ani": "99.96",
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                "status": "-"
            },
            {
                "accession": "GCF_900111095.1",
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            },
            {
                "accession": "GCF_018860855.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea",
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            },
            {
                "accession": "GCF_001597725.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            {
                "accession": "GCF_900155945.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Marinobacterium",
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                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.249,
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        "doubling_h": null,
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        "facultative_respiration": 0.666,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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    "_gtdb_taxon": [
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    ],
    "_genome_taxon": [
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        "p__Pseudomonadota",
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        "f__Nitrincolaceae",
        "g__Amphritea",
        "s__Amphritea sp018067325",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "Nitrincolaceae",
        "Amphritea",
        "Amphritea",
        "sp018067325"
    ],
    "_meo": [
        {
            "id": "MEO_0000066",
            "label": "sediment"
        },
        {
            "id": "MEO_0000327",
            "label": "petroleum"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}