{ "type": "genome", "identifier": "GCA_018240765.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018240765.1", "bioproject": "PRJNA694732", "biosample": "SAMN17574166", "wgs_master": "JAFEFD000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "SZAS LIN-100", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/03", "asm_name": "ASM1824076v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/240/765/GCA_018240765.1_ASM1824076v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-03", "dateModified": "2021-05-03", "datePublished": "2021-05-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Shenzhen" ], "sample_host_location_id": [], "data_size": "0.698 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 80.93, "contamination": 3.65, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2499450", "Number of Sequences": "604", "Longest Sequences (bp)": "34524", "N50 (bp)": "6200", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.9", "Number of CDSs": "1763", "Average Protein Length": "311.6", "Coding Ratio (%)": "65.9", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rudaea cellulosilytica", "strain": "strain=DSM 22992", "accession": "GCA_000378125.1", "taxid": 540746, "species_taxid": 540746, "relation_to_type": "type", "validated": true, "ani": 78.5926, "matched_fragments": 257, "total_fragments": 518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella fugitiva", "strain": "strain=A3", "accession": "GCA_004342425.1", "taxid": 328517, "species_taxid": 328517, "relation_to_type": "type", "validated": true, "ani": 78.3181, "matched_fragments": 250, "total_fragments": 518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tahibacter caeni", "strain": "strain=BUT-6", "accession": "GCA_024609805.1", 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