{
    "type": "genome",
    "identifier": "GCA_018240985.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018240985.1",
        "bioproject": "PRJNA694732",
        "biosample": "SAMN17574106",
        "wgs_master": "JAFEER000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "SZAS CTRL-40",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/03",
        "asm_name": "ASM1824098v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/240/985/GCA_018240985.1_ASM1824098v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-03",
    "dateModified": "2021-05-03",
    "datePublished": "2021-05-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Shenzhen"
        ],
        "sample_host_location_id": [],
        "data_size": "1.118 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 1.14,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4038345",
        "Number of Sequences": "303",
        "Longest Sequences (bp)": "73100",
        "N50 (bp)": "22389",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.0",
        "Number of CDSs": "3487",
        "Average Protein Length": "320.7",
        "Coding Ratio (%)": "83.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Melaminivora jejuensis",
                "strain": "strain=KCTC 32230",
                "accession": "GCA_017811175.1",
                "taxid": 1267217,
                "species_taxid": 1267217,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7323,
                "matched_fragments": 668,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Melaminivora alkalimesophila",
                "strain": "strain=CY1",
                "accession": "GCA_000282995.1",
                "taxid": 1165852,
                "species_taxid": 1165852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4778,
                "matched_fragments": 412,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Melaminivora alkalimesophila",
                "strain": "strain=DSM 26006",
                "accession": "GCA_003182375.1",
                "taxid": 1165852,
                "species_taxid": 1165852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4309,
                "matched_fragments": 594,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax wautersii",
                "strain": "strain=DSM 27981",
                "accession": "GCA_900113035.1",
                "taxid": 1177982,
                "species_taxid": 1177982,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2281,
                "matched_fragments": 678,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax caeni",
                "strain": "strain=R-24608",
                "accession": "GCA_900116825.1",
                "taxid": 343013,
                "species_taxid": 343013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0474,
                "matched_fragments": 628,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax caeni",
                "strain": "strain=R-24608",
                "accession": "GCA_001298675.1",
                "taxid": 343013,
                "species_taxid": 343013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0023,
                "matched_fragments": 636,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax soli",
                "strain": "strain=DSM 25157",
                "accession": "GCA_900107605.1",
                "taxid": 592050,
                "species_taxid": 592050,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6648,
                "matched_fragments": 629,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas terrae",
                "strain": "strain=NBRC 106524",
                "accession": "GCA_001544075.1",
                "taxid": 673548,
                "species_taxid": 673548,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6263,
                "matched_fragments": 640,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax anthurii",
                "strain": "strain=CFPB 3232",
                "accession": "GCA_003269065.1",
                "taxid": 78229,
                "species_taxid": 78229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.461,
                "matched_fragments": 632,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax citrulli",
                "strain": "strain=DSM 17060",
                "accession": "GCA_900100305.1",
                "taxid": 80869,
                "species_taxid": 80869,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3853,
                "matched_fragments": 624,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax carolinensis",
                "strain": "strain=NA3",
                "accession": "GCA_002157145.1",
                "taxid": 553814,
                "species_taxid": 553814,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2661,
                "matched_fragments": 626,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax oryzae",
                "strain": "strain=ATCC 19882",
                "accession": "GCA_000687165.1",
                "taxid": 862720,
                "species_taxid": 862720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2583,
                "matched_fragments": 626,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax konjaci",
                "strain": "strain=DSM 7481",
                "accession": "GCA_900112675.1",
                "taxid": 32040,
                "species_taxid": 32040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7682,
                "matched_fragments": 608,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax facilis",
                "strain": "strain=DSM 649",
                "accession": "GCA_023913775.1",
                "taxid": 12917,
                "species_taxid": 12917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.481,
                "matched_fragments": 579,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudorhodoferax aquiterrae",
                "strain": "strain=KCTC 23314",
                "accession": "GCA_014652235.1",
                "taxid": 747304,
                "species_taxid": 747304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3076,
                "matched_fragments": 630,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
                "strain": "strain=BA0156",
                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2002,
                "matched_fragments": 523,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ottowia testudinis",
                "strain": "strain=27C",
                "accession": "GCA_017498525.1",
                "taxid": 2816950,
                "species_taxid": 2816950,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7658,
                "matched_fragments": 523,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Diaphorobacter aerolatus",
                "strain": "strain=KACC 16536",
                "accession": "GCA_014489535.1",
                "taxid": 1288495,
                "species_taxid": 1288495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7429,
                "matched_fragments": 527,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas koreensis",
                "strain": "strain=KCTC 12005",
                "accession": "GCA_021026195.1",
                "taxid": 160825,
                "species_taxid": 160825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5331,
                "matched_fragments": 495,
                "total_fragments": 1198,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 1.14,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018240985.1",
                "gtdb_species": "s__Alicycliphilus sp018240985",
                "ani": 100.0,
                "matched_fragments": 1186,
                "total_fragments": 1198,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018054745.1",
                "gtdb_species": "s__Alicycliphilus sp018054745",
                "ani": 86.9869,
                "matched_fragments": 654,
                "total_fragments": 1198,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "99.29",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018240995.1",
                "gtdb_species": "s__Alicycliphilus sp018240995",
                "ani": 86.8617,
                "matched_fragments": 649,
                "total_fragments": 1198,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018241405.1",
                "gtdb_species": "s__Alicycliphilus sp018241405",
                "ani": 86.597,
                "matched_fragments": 806,
                "total_fragments": 1198,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.75",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000204645.1",
                "gtdb_species": "s__Alicycliphilus denitrificans",
                "ani": 86.2777,
                "matched_fragments": 836,
                "total_fragments": 1198,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.26",
                "min_intra_species_ani": "95.80",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_018242005.1",
                "gtdb_species": "s__Alicycliphilus sp018242005",
                "ani": 85.8166,
                "matched_fragments": 767,
                "total_fragments": 1198,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000400995.2",
                "gtdb_species": "s__MR-S7 sp000400995",
                "ani": 83.9622,
                "matched_fragments": 722,
                "total_fragments": 1198,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__MR-S7",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.31",
                "min_intra_species_ani": "97.31",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003755025.1",
                "gtdb_species": "s__Diaphorobacter nitroreducens",
                "ani": 83.852,
                "matched_fragments": 710,
                "total_fragments": 1198,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "97.62",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCA_001725235.1",
                "gtdb_species": "s__Acidovorax_C sp001725235",
                "ani": 83.0677,
                "matched_fragments": 695,
                "total_fragments": 1198,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "96.90",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000739995.1",
                "gtdb_species": "s__Giesbergeria granuli",
                "ani": 82.9151,
                "matched_fragments": 595,
                "total_fragments": 1198,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.66",
                "min_intra_species_ani": "95.66",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000484635.1",
                "gtdb_species": "s__Comamonas_C badia",
                "ani": 81.3899,
                "matched_fragments": 558,
                "total_fragments": 1198,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "98.01",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Alicycliphilus",
        "s__Alicycliphilus sp018240985"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Alicycliphilus",
        "s__Alicycliphilus sp018240985",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Alicycliphilus",
        "Alicycliphilus",
        "sp018240985"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}