{
    "type": "genome",
    "identifier": "GCA_018241185.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018241185.1",
        "bioproject": "PRJNA694732",
        "biosample": "SAMN17574127",
        "wgs_master": "JAFEEH000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "SZAS AMP-61",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/03",
        "asm_name": "ASM1824118v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/241/185/GCA_018241185.1_ASM1824118v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-03",
    "dateModified": "2021-05-03",
    "datePublished": "2021-05-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Shenzhen"
        ],
        "sample_host_location_id": [],
        "data_size": "1.458 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5337302",
        "Number of Sequences": "269",
        "Longest Sequences (bp)": "137648",
        "N50 (bp)": "35591",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.7",
        "Number of CDSs": "4858",
        "Average Protein Length": "312.8",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Variovorax boronicumulans",
                "strain": "strain=NBRC 103145",
                "accession": "GCA_001591345.1",
                "taxid": 436515,
                "species_taxid": 436515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4375,
                "matched_fragments": 1026,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax guangxiensis",
                "strain": "strain=DSM 27352",
                "accession": "GCA_003952165.1",
                "taxid": 1775474,
                "species_taxid": 1775474,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.239,
                "matched_fragments": 1099,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax paradoxus",
                "strain": "strain=NBRC 15149",
                "accession": "GCA_001591365.1",
                "taxid": 34073,
                "species_taxid": 34073,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.22,
                "matched_fragments": 1034,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax beijingensis",
                "strain": "strain=502",
                "accession": "GCA_003951285.1",
                "taxid": 2496117,
                "species_taxid": 2496117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0496,
                "matched_fragments": 1032,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax gossypii",
                "strain": "strain=DSM 100435",
                "accession": "GCA_003965815.1",
                "taxid": 1679495,
                "species_taxid": 1679495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9413,
                "matched_fragments": 900,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax soli",
                "strain": "strain=NBRC 106424",
                "accession": "GCA_001591385.1",
                "taxid": 376815,
                "species_taxid": 376815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6937,
                "matched_fragments": 930,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter tataouinensis",
                "strain": "strain=TTB310",
                "accession": "GCA_000215705.1",
                "taxid": 94132,
                "species_taxid": 94132,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2616,
                "matched_fragments": 711,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter aquaticus",
                "strain": "strain=LMG 30558",
                "accession": "GCA_015159745.1",
                "taxid": 2780094,
                "species_taxid": 2780094,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0675,
                "matched_fragments": 648,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter humi",
                "strain": "strain=18x22-1",
                "accession": "GCA_004681975.1",
                "taxid": 2530451,
                "species_taxid": 2530451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9065,
                "matched_fragments": 710,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
                "strain": "strain=BA0156",
                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6765,
                "matched_fragments": 699,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xylophilus ampelinus",
                "strain": "strain=CFBP 1192",
                "accession": "GCA_024832295.1",
                "taxid": 54067,
                "species_taxid": 54067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6043,
                "matched_fragments": 637,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter rhizophilus",
                "strain": "strain=CCTCC AB2015357",
                "accession": "GCA_004681965.1",
                "taxid": 1781167,
                "species_taxid": 1781167,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4037,
                "matched_fragments": 651,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax kalamii",
                "strain": "strain=KNDSW-TSA6",
                "accession": "GCA_002245625.1",
                "taxid": 2004485,
                "species_taxid": 2004485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8959,
                "matched_fragments": 678,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Diaphorobacter caeni",
                "strain": "strain=NR2-3-3-1",
                "accession": "GCA_015354245.1",
                "taxid": 2784387,
                "species_taxid": 2784387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2159,
                "matched_fragments": 568,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax temperans",
                "strain": "strain=DSM 7270",
                "accession": "GCA_006716905.1",
                "taxid": 80878,
                "species_taxid": 80878,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1671,
                "matched_fragments": 522,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Diaphorobacter aerolatus",
                "strain": "strain=KACC 16536",
                "accession": "GCA_014489535.1",
                "taxid": 1288495,
                "species_taxid": 1288495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6308,
                "matched_fragments": 515,
                "total_fragments": 1641,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018241185.1",
                "gtdb_species": "s__ALPHA2B sp018241185",
                "ani": 100.0,
                "matched_fragments": 1629,
                "total_fragments": 1641,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__ALPHA2B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_901875635.1",
                "gtdb_species": "s__ALPHA2B sp901875635",
                "ani": 92.7793,
                "matched_fragments": 1292,
                "total_fragments": 1641,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__ALPHA2B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003671765.1",
                "gtdb_species": "s__ALPHA2B sp003671765",
                "ani": 92.1532,
                "matched_fragments": 1342,
                "total_fragments": 1641,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__ALPHA2B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005503065.1",
                "gtdb_species": "s__ALPHA2B sp005503065",
                "ani": 91.3771,
                "matched_fragments": 1283,
                "total_fragments": 1641,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__ALPHA2B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000745855.1",
                "gtdb_species": "s__Xenophilus azovorans",
                "ani": 85.2339,
                "matched_fragments": 1092,
                "total_fragments": 1641,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Xenophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016806145.1",
                "gtdb_species": "s__Variovorax sp900115375",
                "ani": 83.4766,
                "matched_fragments": 1140,
                "total_fragments": 1641,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.08",
                "min_intra_species_ani": "95.68",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_014170375.1",
                "gtdb_species": "s__Variovorax sp014170375",
                "ani": 83.4646,
                "matched_fragments": 1018,
                "total_fragments": 1641,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013376045.1",
                "gtdb_species": "s__Variovorax sp013376045",
                "ani": 83.3414,
                "matched_fragments": 1081,
                "total_fragments": 1641,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900090195.1",
                "gtdb_species": "s__Variovorax sp900090195",
                "ani": 81.8877,
                "matched_fragments": 932,
                "total_fragments": 1641,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Xenophilus",
        "s__Xenophilus sp018241185"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Xenophilus",
        "s__Xenophilus sp018241185",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Xenophilus",
        "Xenophilus",
        "sp018241185"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}