{ "type": "genome", "identifier": "GCA_018241225.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018241225.1", "bioproject": "PRJNA694732", "biosample": "SAMN17574126", "wgs_master": "JAFEEG000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "SZAS AMP-60", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/03", "asm_name": "ASM1824122v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/241/225/GCA_018241225.1_ASM1824122v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-03", "dateModified": "2021-05-03", "datePublished": "2021-05-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Shenzhen" ], "sample_host_location_id": [], "data_size": "1.757 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6414256", "Number of Sequences": "55", "Longest Sequences (bp)": "552665", "N50 (bp)": "164915", "Gap Ratio (%)": "0.009074", "GCcontent (%)": "66.5", "Number of CDSs": "6138", "Average Protein Length": "320.5", "Coding Ratio (%)": "92.0", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Variovorax soli", "strain": "strain=NBRC 106424", "accession": "GCA_001591385.1", "taxid": 376815, "species_taxid": 376815, "relation_to_type": "type", "validated": true, "ani": 90.0583, "matched_fragments": 1348, "total_fragments": 2112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax boronicumulans", "strain": "strain=NBRC 103145", "accession": "GCA_001591345.1", "taxid": 436515, "species_taxid": 436515, "relation_to_type": "type", "validated": true, "ani": 83.2173, "matched_fragments": 1104, "total_fragments": 2112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax guangxiensis", "strain": 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