{ "type": "genome", "identifier": "GCA_018261235.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Colorado State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018261235.1", "bioproject": "PRJNA638681", "biosample": "SAMN15718107", "wgs_master": "JAGTTB000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "CTSoil_155", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/04", "asm_name": "ASM1826123v1", "submitter": "Colorado State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/261/235/GCA_018261235.1_ASM1826123v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-04", "dateModified": "2021-05-04", "datePublished": "2021-05-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ohio, Old Woman Creek delta" ], "sample_host_location_id": [], "data_size": "0.317 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 33.3, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1122283", "Number of Sequences": "286", "Longest Sequences (bp)": "11918", "N50 (bp)": "3844", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.1", "Number of CDSs": "790", "Average Protein Length": "285.6", "Coding Ratio (%)": "60.3", "Number of rRNAs": "0", "Number of tRNAs": "10", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 33.3, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018262135.1", "gtdb_species": "s__Contendobacter sp018262135", "ani": 97.8742, "matched_fragments": 187, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Contendobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_008933795.1", 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sp018262135", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Competibacterales", "Competibacteraceae", "JARSSO01", "JARSSO01", "sp018262135" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" }, { "id": "MEO_0000669", "label": "wetland soil" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }