{ "type": "genome", "identifier": "GCA_018261895.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Colorado State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018261895.1", "bioproject": "PRJNA638681", "biosample": "SAMN15718073", "wgs_master": "JAGTRT000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "CTSoil_121", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/04", "asm_name": "ASM1826189v1", "submitter": "Colorado State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/261/895/GCA_018261895.1_ASM1826189v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-04", "dateModified": "2021-05-04", "datePublished": "2021-05-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ohio, Old Woman Creek delta" ], "sample_host_location_id": [], "data_size": "0.922 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3299370", "Number of Sequences": "93", "Longest Sequences (bp)": "156190", "N50 (bp)": "70559", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.8", "Number of CDSs": "3088", "Average Protein Length": "316.0", "Coding Ratio (%)": "88.7", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dechloromonas denitrificans", "strain": "strain=ATCC BAA-841", "accession": "GCA_001551835.1", "taxid": 281362, "species_taxid": 281362, "relation_to_type": "type", "validated": true, "ani": 82.5086, "matched_fragments": 676, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dechloromonas hortensis", "strain": "strain=MA-1", "accession": "GCA_009469765.1", "taxid": 337779, "species_taxid": 337779, "relation_to_type": "type", "validated": true, "ani": 82.3469, "matched_fragments": 662, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azonexus fungiphilus", "strain": "strain=DSM 23841", "accession": "GCA_003634965.1", "taxid": 146940, "species_taxid": 146940, "relation_to_type": "type", "validated": true, "ani": 81.8274, "matched_fragments": 545, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azonexus hydrophilus", "strain": "strain=DSM 23864", "accession": "GCA_000429605.1", "taxid": 418702, "species_taxid": 418702, "relation_to_type": "type", "validated": true, "ani": 81.4835, "matched_fragments": 556, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_009469755.1", "taxid": 1066, "species_taxid": 1066, "relation_to_type": "type", "validated": true, "ani": 78.3126, "matched_fragments": 310, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propionivibrio limicola", "strain": "strain=GolChi1", "accession": "GCA_009469695.1", "taxid": 167645, "species_taxid": 167645, "relation_to_type": "type", "validated": true, "ani": 78.0689, "matched_fragments": 213, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=BSN1", "accession": "GCA_003865015.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 77.7878, "matched_fragments": 247, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus gracilis", "strain": "strain=DSM 110", "accession": "GCA_009617575.1", "taxid": 2929842, "species_taxid": 2929842, "relation_to_type": "type", "validated": true, "ani": 77.6907, "matched_fragments": 238, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas brunnea", "strain": "strain=LX20W", "accession": "GCA_014042345.1", "taxid": 2758569, "species_taxid": 2758569, "relation_to_type": "type", "validated": true, "ani": 76.4735, "matched_fragments": 180, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia norwichensis", "strain": "strain=LMG 28164", "accession": "GCA_024753245.1", "taxid": 1442366, "species_taxid": 1442366, "relation_to_type": "type", "validated": true, "ani": 76.4541, "matched_fragments": 172, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella dendranthematis", "strain": "strain=AF9R3", "accession": "GCA_012849375.1", "taxid": 2728021, "species_taxid": 2728021, "relation_to_type": "type", "validated": true, "ani": 76.4286, "matched_fragments": 156, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium alticapitis", "strain": "strain=MWU14-2602", "accession": "GCA_002924365.1", "taxid": 2073169, "species_taxid": 2073169, "relation_to_type": "type", "validated": true, "ani": 76.3103, "matched_fragments": 126, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium sinusclupearum", "strain": "strain=MWU13-2610", "accession": "GCA_002902845.1", "taxid": 2077146, "species_taxid": 2077146, "relation_to_type": "type", "validated": true, "ani": 76.0984, "matched_fragments": 119, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018261895.1", "gtdb_species": "s__Azonexus sp018261895", "ani": 100.0, "matched_fragments": 1047, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_013335535.1", "gtdb_species": "s__Azonexus sp013335535", "ani": 85.6393, "matched_fragments": 802, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018780195.1", "gtdb_species": "s__Azonexus sp018780195", "ani": 85.2006, "matched_fragments": 629, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018828385.1", "gtdb_species": "s__Azonexus sp018828385", "ani": 85.0804, "matched_fragments": 762, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_008080565.1", "gtdb_species": "s__Azonexus sp008080565", "ani": 85.0484, "matched_fragments": 749, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002840785.1", "gtdb_species": "s__Azonexus sp002840785", "ani": 84.9445, "matched_fragments": 714, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016705475.1", "gtdb_species": "s__Azonexus sp016705475", "ani": 84.2256, "matched_fragments": 679, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "98.37", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_907163225.1", "gtdb_species": "s__Azonexus sp907163225", "ani": 83.4764, "matched_fragments": 667, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903930395.1", "gtdb_species": "s__Azonexus sp903930395", "ani": 82.9241, "matched_fragments": 438, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903922075.1", "gtdb_species": "s__Azonexus sp903922075", "ani": 82.907, "matched_fragments": 512, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009469585.1", "gtdb_species": "s__Azonexus sp009469585", "ani": 82.8703, "matched_fragments": 623, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001551835.1", "gtdb_species": "s__Azonexus denitrificans", "ani": 82.5355, "matched_fragments": 674, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000012425.1", "gtdb_species": "s__Azonexus aromaticus_A", "ani": 82.4916, "matched_fragments": 702, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.34", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009469765.1", "gtdb_species": "s__Azonexus hortensis", "ani": 82.3585, "matched_fragments": 661, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002440665.1", "gtdb_species": "s__Azonexus sp002440665", "ani": 82.3251, "matched_fragments": 552, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018261905.1", "gtdb_species": "s__Azonexus sp018261905", "ani": 81.7805, "matched_fragments": 620, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_008933675.1", "gtdb_species": "s__Azonexus sp008933675", "ani": 81.7519, "matched_fragments": 565, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002840765.1", "gtdb_species": "s__Azonexus sp002840765", "ani": 81.3825, "matched_fragments": 614, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Rhodocyclaceae", "g__Azonexus", "s__Azonexus sp018261895" ], "_genome_taxon": [ "Pseudomonadota", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Rhodocyclaceae", "g__Azonexus", "s__Azonexus sp018261895", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Rhodocyclaceae", "Azonexus", "Azonexus", "sp018261895" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" }, { "id": "MEO_0000669", "label": "wetland soil" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }