{ "type": "genome", "identifier": "GCA_018262625.1", "organism": "Burkholderiaceae bacterium", "title": "Burkholderiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Colorado State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018262625.1", "bioproject": "PRJNA638681", "biosample": "SAMN15718061", "wgs_master": "JAGSYX000000000.1", "refseq_category": "na", "taxid": "2030806", "species_taxid": "2030806", "organism_name": "Burkholderiaceae bacterium", "infraspecific_name": "", "isolate": "CTSoil_109", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/04", "asm_name": "ASM1826262v1", "submitter": "Colorado State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/262/625/GCA_018262625.1_ASM1826262v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-04", "dateModified": "2021-05-04", "datePublished": "2021-05-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiaceae bacterium" ], "sample_taxid": [ "2030806" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ohio, Old Woman Creek delta" ], "sample_host_location_id": [], "data_size": "0.788 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 43.42, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2814458", "Number of Sequences": "576", "Longest Sequences (bp)": "31507", "N50 (bp)": "5040", "Gap Ratio (%)": "0.000355", "GCcontent (%)": "65.5", "Number of CDSs": "2250", "Average Protein Length": "284.4", "Coding Ratio (%)": "68.2", "Number of rRNAs": "0", "Number of tRNAs": "19", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cupriavidus nantongensis", "strain": "strain=X1", "accession": "GCA_001598055.1", "taxid": 1796606, "species_taxid": 1796606, "relation_to_type": "type", "validated": true, "ani": 76.6404, "matched_fragments": 108, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000420125.1", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 76.5058, "matched_fragments": 101, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 76.4863, "matched_fragments": 102, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus gilardii", "strain": "strain=ATCC 700815", "accession": "GCA_013004615.1", "taxid": 82541, "species_taxid": 82541, "relation_to_type": "type", "validated": true, "ani": 76.4564, "matched_fragments": 93, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus gilardii", "strain": "strain=CCUG 38401", "accession": "GCA_008801915.1", "taxid": 82541, "species_taxid": 82541, "relation_to_type": "type", "validated": true, "ani": 76.4027, "matched_fragments": 95, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia dolosa", "strain": "strain=FDAARGOS_1463", "accession": "GCA_019930785.1", "taxid": 152500, "species_taxid": 152500, "relation_to_type": "type", "validated": true, "ani": 76.3353, "matched_fragments": 99, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia arenosa", "strain": "strain=MC02", "accession": "GCA_004614185.1", "taxid": 2561931, "species_taxid": 2561931, "relation_to_type": "type", "validated": true, "ani": 76.271, "matched_fragments": 68, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia dolosa", "strain": "strain=LMG 18943", "accession": "GCA_902499135.1", "taxid": 152500, "species_taxid": 152500, "relation_to_type": "type", "validated": true, "ani": 76.267, "matched_fragments": 99, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Derxia gummosa", "strain": "strain=DSM 723", "accession": "GCA_000482785.1", "taxid": 203699, "species_taxid": 203699, "relation_to_type": "type", "validated": true, "ani": 76.2645, "matched_fragments": 86, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 76.2548, "matched_fragments": 101, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum anaerobium", "strain": "strain=LuFRes1", "accession": "GCA_012910705.2", "taxid": 182180, "species_taxid": 182180, "relation_to_type": "type", "validated": true, "ani": 76.2352, "matched_fragments": 81, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus agavae", "strain": "strain=ASC-9842", "accession": "GCA_004217045.1", "taxid": 1001822, "species_taxid": 1001822, "relation_to_type": "type", "validated": true, "ani": 76.2255, "matched_fragments": 96, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aminoaromatica", "strain": "strain=S2", "accession": "GCA_000310185.1", "taxid": 164330, "species_taxid": 164330, "relation_to_type": "type", "validated": true, "ani": 76.1739, "matched_fragments": 86, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus plantarum", "strain": "strain=LMG 26296", "accession": "GCA_905397285.1", "taxid": 942865, "species_taxid": 942865, "relation_to_type": "type", "validated": true, "ani": 76.1655, "matched_fragments": 79, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia oklahomensis", "strain": "strain=C6786", "accession": "GCA_000170375.1", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 76.0954, "matched_fragments": 93, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia oklahomensis", "strain": "strain=C6786", "accession": "GCA_001522135.2", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 76.0551, "matched_fragments": 99, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia oklahomensis", "strain": "strain=LMG 23618", "accession": "GCA_900608545.1", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 76.0481, "matched_fragments": 101, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Derxia lacustris", "strain": "strain=HL-12", "accession": "GCA_002105195.1", "taxid": 764842, "species_taxid": 764842, "relation_to_type": "type", "validated": true, "ani": 75.9144, "matched_fragments": 103, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia forsythiae", "strain": "strain=GN2-R2", "accession": 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