{
    "type": "genome",
    "identifier": "GCA_018264405.1",
    "organism": "Clostridium sp.",
    "title": "Clostridium sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Vienna",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018264405.1",
        "bioproject": "PRJNA593787",
        "biosample": "SAMN14944981",
        "wgs_master": "JABMBG000000000.1",
        "refseq_category": "na",
        "taxid": "1506",
        "species_taxid": "1506",
        "organism_name": "Clostridium sp.",
        "infraspecific_name": "",
        "isolate": "SQ_MAG_83",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/04",
        "asm_name": "ASM1826440v1",
        "submitter": "University of Vienna",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/264/405/GCA_018264405.1_ASM1826440v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-04",
    "dateModified": "2021-05-04",
    "datePublished": "2021-05-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridium sp."
        ],
        "sample_taxid": [
            "1506"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Austria: Vienna"
        ],
        "sample_host_location_id": [],
        "data_size": "0.240 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 50.34,
        "contamination": 0.52,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "823372",
        "Number of Sequences": "249",
        "Longest Sequences (bp)": "10680",
        "N50 (bp)": "3379",
        "Gap Ratio (%)": "0.018218",
        "GCcontent (%)": "60.3",
        "Number of CDSs": "540",
        "Average Protein Length": "279.3",
        "Coding Ratio (%)": "55.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "10",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Collinsella aerofaciens",
                "strain": "strain=ATCC 25986",
                "accession": "GCA_000169035.1",
                "taxid": 74426,
                "species_taxid": 74426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.5739,
                "matched_fragments": 121,
                "total_fragments": 126,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Collinsella aerofaciens",
                "strain": "strain=NCTC11838",
                "accession": "GCA_900461335.1",
                "taxid": 74426,
                "species_taxid": 74426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.5275,
                "matched_fragments": 123,
                "total_fragments": 126,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Collinsella aerofaciens",
                "strain": "strain=JCM 10188",
                "accession": "GCA_010509075.1",
                "taxid": 74426,
                "species_taxid": 74426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.5009,
                "matched_fragments": 123,
                "total_fragments": 126,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Collinsella bouchesdurhonensis",
                "strain": "strain=Marseille-P3296",
                "accession": "GCA_900155365.1",
                "taxid": 1907654,
                "species_taxid": 1907654,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2135,
                "matched_fragments": 52,
                "total_fragments": 126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enorma burkinafasonensis",
                "strain": "strain=Marseille-P9525",
                "accession": "GCA_902150035.1",
                "taxid": 2590867,
                "species_taxid": 2590867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9016,
                "matched_fragments": 50,
                "total_fragments": 126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Collinsella tanakaei",
                "strain": "strain=YIT 12063",
                "accession": "GCA_000225705.1",
                "taxid": 626935,
                "species_taxid": 626935,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.3327,
                "matched_fragments": 50,
                "total_fragments": 126,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 50.34,
            "contamination": 0.52,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902363125.1",
                "gtdb_species": "s__Collinsella sp902363125",
                "ani": 95.8226,
                "matched_fragments": 118,
                "total_fragments": 126,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.02",
                "min_intra_species_ani": "96.02",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_900752545.1",
                "gtdb_species": "s__Collinsella sp900752545",
                "ani": 95.2651,
                "matched_fragments": 119,
                "total_fragments": 126,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_900752215.1",
                "gtdb_species": "s__Collinsella sp900752215",
                "ani": 95.09,
                "matched_fragments": 111,
                "total_fragments": 126,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0875,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_900542315.1",
                "gtdb_species": "s__Collinsella sp900542315",
                "ani": 94.8766,
                "matched_fragments": 119,
                "total_fragments": 126,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002736145.1",
                "gtdb_species": "s__Collinsella aerofaciens_A",
                "ani": 94.7379,
                "matched_fragments": 120,
                "total_fragments": 126,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900542275.1",
                "gtdb_species": "s__Collinsella sp900542275",
                "ani": 94.625,
                "matched_fragments": 110,
                "total_fragments": 126,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.02",
                "min_intra_species_ani": "95.02",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900545555.1",
                "gtdb_species": "s__Collinsella sp900545555",
                "ani": 94.3146,
                "matched_fragments": 113,
                "total_fragments": 126,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0872,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900546825.1",
                "gtdb_species": "s__Collinsella sp900546825",
                "ani": 94.1095,
                "matched_fragments": 113,
                "total_fragments": 126,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900552395.1",
                "gtdb_species": "s__Collinsella sp900552395",
                "ani": 92.9521,
                "matched_fragments": 100,
                "total_fragments": 126,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.15,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900756725.1",
                "gtdb_species": "s__Collinsella sp900756725",
                "ani": 92.0411,
                "matched_fragments": 105,
                "total_fragments": 126,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.39",
                "min_intra_species_ani": "95.39",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.16,
        "cell_length": 0.434,
        "doubling_h": 0.353,
        "growth_tmp": 33.457,
        "optimum_tmp": 35.173,
        "optimum_ph": 6.947,
        "genome_size": 4165901.003,
        "gc_content": 29.49,
        "coding_genes": 3796.985,
        "rRNA16S_genes": 9.374,
        "tRNA_genes": 78.312,
        "gram_stain": 0.945,
        "sporulation": 0.967,
        "motility": 0.92,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.944,
        "thermophilic_range_tmp": 0.055,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Coriobacteriia",
        "o__Coriobacteriales",
        "f__Coriobacteriaceae",
        "g__Collinsella",
        "s__Collinsella sp019041915"
    ],
    "_genome_taxon": [
        "Clostridium",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Coriobacteriia",
        "o__Coriobacteriales",
        "f__Coriobacteriaceae",
        "g__Collinsella",
        "s__Collinsella sp019041915",
        "Bacteria",
        "Actinomycetota",
        "Coriobacteriia",
        "Coriobacteriales",
        "Coriobacteriaceae",
        "Collinsella",
        "Collinsella",
        "sp019041915"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}