{
    "type": "genome",
    "identifier": "GCA_018264475.1",
    "organism": "Lachnospira sp.",
    "title": "Lachnospira sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Vienna",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018264475.1",
        "bioproject": "PRJNA593787",
        "biosample": "SAMN14944977",
        "wgs_master": "JABMBC000000000.1",
        "refseq_category": "na",
        "taxid": "2049031",
        "species_taxid": "2049031",
        "organism_name": "Lachnospira sp.",
        "infraspecific_name": "",
        "isolate": "SQ_MAG_79",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/04",
        "asm_name": "ASM1826447v1",
        "submitter": "University of Vienna",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/264/475/GCA_018264475.1_ASM1826447v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-04",
    "dateModified": "2021-05-04",
    "datePublished": "2021-05-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lachnospira sp."
        ],
        "sample_taxid": [
            "2049031"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Austria: Vienna"
        ],
        "sample_host_location_id": [],
        "data_size": "0.534 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 54.69,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1864253",
        "Number of Sequences": "430",
        "Longest Sequences (bp)": "30622",
        "N50 (bp)": "4789",
        "Gap Ratio (%)": "0.011265",
        "GCcontent (%)": "36.8",
        "Number of CDSs": "1480",
        "Average Protein Length": "283.0",
        "Coding Ratio (%)": "67.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "12",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lachnospira eligens",
                "strain": "strain=ATCC 27750",
                "accession": "GCA_000146185.1",
                "taxid": 39485,
                "species_taxid": 39485,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.5974,
                "matched_fragments": 128,
                "total_fragments": 389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lachnospira multipara",
                "strain": "strain=ATCC 19207",
                "accession": "GCA_000424105.1",
                "taxid": 28051,
                "species_taxid": 28051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6041,
                "matched_fragments": 50,
                "total_fragments": 389,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 54.69,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014287955.1",
                "gtdb_species": "s__Lachnospira sp900316325",
                "ani": 99.1733,
                "matched_fragments": 360,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.35",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 10,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900112995.1",
                "gtdb_species": "s__Lachnospira rogosae_A",
                "ani": 78.8806,
                "matched_fragments": 121,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "98.51",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCA_002435585.1",
                "gtdb_species": "s__Lachnospira sp002435585",
                "ani": 78.1712,
                "matched_fragments": 90,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900547255.1",
                "gtdb_species": "s__Lachnospira sp900547255",
                "ani": 78.1093,
                "matched_fragments": 122,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900772425.1",
                "gtdb_species": "s__Lachnospira sp900772425",
                "ani": 78.0323,
                "matched_fragments": 64,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900545725.1",
                "gtdb_species": "s__Lachnospira sp900545725",
                "ani": 77.9749,
                "matched_fragments": 118,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.88",
                "min_intra_species_ani": "98.45",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900552795.1",
                "gtdb_species": "s__Lachnospira sp900552795",
                "ani": 77.8062,
                "matched_fragments": 96,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "99.07",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000436475.1",
                "gtdb_species": "s__Lachnospira sp000436475",
                "ani": 77.6449,
                "matched_fragments": 112,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.97",
                "min_intra_species_ani": "97.42",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_002394205.1",
                "gtdb_species": "s__Lachnospira sp002394205",
                "ani": 77.6358,
                "matched_fragments": 67,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000437735.1",
                "gtdb_species": "s__Lachnospira sp000437735",
                "ani": 77.4913,
                "matched_fragments": 88,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.12",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_900551945.1",
                "gtdb_species": "s__Lachnospira sp900551945",
                "ani": 77.2623,
                "matched_fragments": 88,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "99.16",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017397445.1",
                "gtdb_species": "s__Lachnospira sp017397445",
                "ani": 77.2616,
                "matched_fragments": 63,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910587485.1",
                "gtdb_species": "s__Lachnospira sp910587485",
                "ani": 76.8837,
                "matched_fragments": 53,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910585095.1",
                "gtdb_species": "s__Lachnospira sp910585095",
                "ani": 76.7511,
                "matched_fragments": 58,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018918265.1",
                "gtdb_species": "s__Falcatimonas sp018918265",
                "ani": 76.6619,
                "matched_fragments": 52,
                "total_fragments": 389,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Falcatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "98.30",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 38.0,
        "optimum_tmp": 38.0,
        "optimum_ph": null,
        "genome_size": 2724871.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
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        "f__Lachnospiraceae",
        "g__Lachnospira",
        "s__Lachnospira hominis"
    ],
    "_genome_taxon": [
        "Lachnospira",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Lachnospira",
        "s__Lachnospira hominis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Lachnospira",
        "Lachnospira",
        "hominis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}