{ "type": "genome", "identifier": "GCA_018266795.1", "organism": "Bacteroidota bacterium", "title": "Bacteroidota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018266795.1", "bioproject": "PRJNA694732", "biosample": "SAMN17574013", "wgs_master": "JAFDZV000000000.1", "refseq_category": "na", "taxid": "1898104", "species_taxid": "1898104", "organism_name": "Bacteroidota bacterium", "infraspecific_name": "", "isolate": "SZAS-92", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/04", "asm_name": "ASM1826679v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/266/795/GCA_018266795.1_ASM1826679v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-04", "dateModified": "2021-05-04", "datePublished": "2021-05-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacteroidota bacterium" ], "sample_taxid": [ "1898104" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Shenzhen" ], "sample_host_location_id": [], "data_size": "1.672 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 96.3, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5971256", "Number of Sequences": "71", "Longest Sequences (bp)": "392453", "N50 (bp)": "164955", "Gap Ratio (%)": "0.028955", "GCcontent (%)": "61.5", "Number of CDSs": "4341", "Average Protein Length": "377.5", "Coding Ratio (%)": "82.3", "Number of rRNAs": "1", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polyangium aurulentum", "strain": "strain=SDU3-1", "accession": "GCA_005144635.2", "taxid": 2567896, "species_taxid": 2567896, "relation_to_type": "type", "validated": true, "ani": 74.8044, "matched_fragments": 81, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 74.7394, "matched_fragments": 54, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea glycinis", "strain": "strain=NEAU-BB2C19", "accession": "GCA_020215885.1", "taxid": 2047744, "species_taxid": 2047744, "relation_to_type": "type", "validated": true, "ani": 74.6475, "matched_fragments": 57, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 74.6421, "matched_fragments": 61, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea glycinis", "strain": "strain=CGMCC 4.7430", "accession": "GCA_014646515.1", "taxid": 2047744, "species_taxid": 2047744, "relation_to_type": "type", "validated": true, "ani": 74.5792, "matched_fragments": 55, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 96.3, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018266795.1", "gtdb_species": "s__JAFDZV01 sp018266795", "ani": 100.0, "matched_fragments": 1952, "total_fragments": 1956, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Kapabacteria;o__OLB7;f__OLB7;g__JAFDZV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_016788565.1", "gtdb_species": "s__OLB7 sp016788565", "ani": 75.6768, "matched_fragments": 58, "total_fragments": 1956, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Kapabacteria;o__OLB7;f__OLB7;g__OLB7", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005144635.1", "gtdb_species": "s__Polyangium sp005144635", "ani": 74.8044, "matched_fragments": 81, "total_fragments": 1956, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Polyangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014646515.1", "gtdb_species": "s__Nonomuraea glycinis", "ani": 74.6043, "matched_fragments": 54, "total_fragments": 1956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Kapaibacteriia", "o__OLB7", "f__OLB7", "g__JAFDZV01", "s__JAFDZV01 sp018266795" ], "_genome_taxon": [ "Bacteroidota", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Kapaibacteriia", "o__OLB7", "f__OLB7", "g__JAFDZV01", "s__JAFDZV01 sp018266795", "Bacteria", "Bacteroidota", "Kapaibacteriia", "OLB7", "OLB7", "JAFDZV01", "JAFDZV01", "sp018266795" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }