{ "type": "genome", "identifier": "GCA_018268575.1", "organism": "Actinomycetota bacterium", "title": "Actinomycetota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018268575.1", "bioproject": "PRJNA694732", "biosample": "SAMN17573910", "wgs_master": "JAFDWF000000000.1", "refseq_category": "na", "taxid": "2900548", "species_taxid": "2900548", "organism_name": "Actinomycetota bacterium", "infraspecific_name": "", "isolate": "SZAS-14", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/04", "asm_name": "ASM1826857v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/268/575/GCA_018268575.1_ASM1826857v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-04", "dateModified": "2021-05-04", "datePublished": "2021-05-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Shenzhen" ], "sample_host_location_id": [], "data_size": "1.161 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 88.53, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4297141", "Number of Sequences": "226", "Longest Sequences (bp)": "175113", "N50 (bp)": "30619", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.2", "Number of CDSs": "4161", "Average Protein Length": "297.5", "Coding Ratio (%)": "86.4", "Number of rRNAs": "1", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 76.8031, "matched_fragments": 485, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter medicamentivorans", "strain": "strain=I11", "accession": "GCA_000240225.2", "taxid": 1097667, "species_taxid": 1097667, "relation_to_type": "type", "validated": true, "ani": 76.5308, "matched_fragments": 372, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 76.4905, "matched_fragments": 464, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capillimicrobium parvum", "strain": "strain=0166_1", "accession": "GCA_021172045.1", "taxid": 2884022, "species_taxid": 2884022, "relation_to_type": "type", "validated": true, "ani": 76.2732, "matched_fragments": 387, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Baekduia soli", "strain": "strain=BR7-21", "accession": "GCA_007970665.1", "taxid": 496014, "species_taxid": 496014, "relation_to_type": "type", "validated": true, "ani": 76.1585, "matched_fragments": 378, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 76.1181, "matched_fragments": 365, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 75.8813, "matched_fragments": 385, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Miltoncostaea oceani", "strain": "strain=SCSIO 61214", "accession": "GCA_018141545.1", "taxid": 2843216, "species_taxid": 2843216, "relation_to_type": "type", "validated": true, "ani": 75.4437, "matched_fragments": 247, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix algeriensis", "strain": "strain=DSM 44581", "accession": "GCA_016907655.1", "taxid": 173560, "species_taxid": 173560, "relation_to_type": "type", "validated": true, "ani": 74.9934, "matched_fragments": 258, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Symbiobacterium terraclitae", "strain": "strain=DSM 27138", "accession": "GCA_017874315.1", "taxid": 557451, "species_taxid": 557451, "relation_to_type": "type", "validated": true, "ani": 74.9606, "matched_fragments": 71, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium immunditiarum", "strain": "strain=DSM 24662", "accession": "GCA_013409785.1", "taxid": 337480, "species_taxid": 337480, "relation_to_type": "type", "validated": true, "ani": 74.9399, "matched_fragments": 122, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 74.9203, "matched_fragments": 60, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hominis", "strain": "strain=LCDC 84-0209", "accession": "GCA_001553805.1", "taxid": 162426, "species_taxid": 162426, "relation_to_type": "type", "validated": true, "ani": 74.9061, "matched_fragments": 124, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix saharensis", "strain": "strain=DSM 45456", "accession": "GCA_006716745.1", "taxid": 571190, "species_taxid": 571190, "relation_to_type": "type", "validated": true, "ani": 74.8792, "matched_fragments": 230, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hominis", "strain": "strain=NBRC 15708", "accession": "GCA_001592125.1", "taxid": 162426, "species_taxid": 162426, "relation_to_type": "type", "validated": true, "ani": 74.8414, "matched_fragments": 125, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces boncukensis", "strain": "strain=SB3404", "accession": "GCA_011045075.1", "taxid": 2711219, "species_taxid": 2711219, "relation_to_type": "type", "validated": true, "ani": 74.8396, "matched_fragments": 214, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium waimense", "strain": "strain=ICMP19557", "accession": "GCA_003601975.1", "taxid": 1300307, "species_taxid": 1300307, "relation_to_type": "type", "validated": true, "ani": 74.8384, "matched_fragments": 103, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 88.53, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018268575.1", "gtdb_species": "s__VAYN01 sp018268575", "ani": 100.0, "matched_fragments": 1307, "total_fragments": 1318, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__70-9;g__VAYN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.22", "min_intra_species_ani": "96.22", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.76", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_018268675.1", "gtdb_species": "s__VAYN01 sp018268675", "ani": 86.2141, "matched_fragments": 793, "total_fragments": 1318, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__70-9;g__VAYN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018268415.1", "gtdb_species": "s__VAYN01 sp018268415", "ani": 85.3413, "matched_fragments": 761, "total_fragments": 1318, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__70-9;g__VAYN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018268605.1", "gtdb_species": "s__VAYN01 sp018268605", "ani": 84.8991, "matched_fragments": 652, "total_fragments": 1318, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__70-9;g__VAYN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013821475.1", "gtdb_species": "s__VAYN01 sp013821475", "ani": 82.699, "matched_fragments": 497, "total_fragments": 1318, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__70-9;g__VAYN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017882505.1", "gtdb_species": "s__VAYN01 sp017882505", "ani": 82.5589, "matched_fragments": 522, "total_fragments": 1318, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__70-9;g__VAYN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016649905.1", "gtdb_species": "s__VAYN01 sp016649905", "ani": 82.4452, "matched_fragments": 500, "total_fragments": 1318, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__70-9;g__VAYN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018268655.1", "gtdb_species": "s__VAYN01 sp018268655", "ani": 82.4231, "matched_fragments": 538, "total_fragments": 1318, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__70-9;g__VAYN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Thermoleophilia", "o__Solirubrobacterales", "f__70-9", "g__VAYN01", "s__VAYN01 sp018268575" ], "_genome_taxon": [ "Actinomycetota", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Thermoleophilia", "o__Solirubrobacterales", "f__70-9", "g__VAYN01", "s__VAYN01 sp018268575", "Bacteria", "Actinomycetota", "Thermoleophilia", "Solirubrobacterales", "70-9", "VAYN01", "VAYN01", "sp018268575" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }