{ "type": "genome", "identifier": "GCA_018268775.1", "organism": "Acidobacteriota bacterium", "title": "Acidobacteriota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018268775.1", "bioproject": "PRJNA694732", "biosample": "SAMN17573879", "wgs_master": "JAFDVV000000000.1", "refseq_category": "na", "taxid": "1978231", "species_taxid": "1978231", "organism_name": "Acidobacteriota bacterium", "infraspecific_name": "", "isolate": "SZAS AMP-1", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/04", "asm_name": "ASM1826877v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/268/775/GCA_018268775.1_ASM1826877v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-04", "dateModified": "2021-05-04", "datePublished": "2021-05-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidobacteriota bacterium" ], "sample_taxid": [ "1978231" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Shenzhen" ], "sample_host_location_id": [], "data_size": "1.133 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.07, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3985596", "Number of Sequences": "111", "Longest Sequences (bp)": "268652", "N50 (bp)": "55684", "Gap Ratio (%)": "0.138348", "GCcontent (%)": "60.1", "Number of CDSs": "3285", "Average Protein Length": "342.2", "Coding Ratio (%)": "84.6", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Edaphobacter aggregans", "strain": "strain=DSM 19364", "accession": "GCA_000745965.1", "taxid": 570835, "species_taxid": 570835, "relation_to_type": "type", "validated": true, "ani": 79.9996, "matched_fragments": 635, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter flagellatus", "strain": "strain=HZ411", "accession": "GCA_025264665.1", "taxid": 1933044, "species_taxid": 1933044, "relation_to_type": "type", "validated": true, "ani": 79.8258, "matched_fragments": 628, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter modestus", "strain": "strain=DSM 18101", "accession": "GCA_004217555.1", "taxid": 388466, "species_taxid": 388466, "relation_to_type": "type", "validated": true, "ani": 79.2573, "matched_fragments": 488, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter dinghuensis", "strain": "strain=CGMCC 1.12997", "accession": "GCA_014640335.1", "taxid": 1560005, "species_taxid": 1560005, "relation_to_type": "type", "validated": true, "ani": 78.5111, "matched_fragments": 327, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter acidisoli", "strain": "strain=CGMCC 1.15447", "accession": "GCA_014642855.1", "taxid": 2040573, "species_taxid": 2040573, "relation_to_type": "type", "validated": true, "ani": 78.0895, "matched_fragments": 330, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella rosea", "strain": "strain=DSM 18704", "accession": "GCA_900188085.1", "taxid": 474952, "species_taxid": 474952, "relation_to_type": "type", "validated": true, "ani": 78.0841, "matched_fragments": 338, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter lichenicola", "strain": "strain=DSM 104462", "accession": "GCA_025264645.1", "taxid": 2051959, "species_taxid": 2051959, "relation_to_type": "suspected-type", "validated": true, "ani": 77.812, "matched_fragments": 281, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella mallensis", "strain": "strain=MP5ACTX8", "accession": "GCA_000178955.2", "taxid": 940614, "species_taxid": 940614, "relation_to_type": "type", "validated": true, "ani": 77.7325, "matched_fragments": 272, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella sibirica", "strain": "strain=AF10", "accession": "GCA_004115155.1", "taxid": 2479048, "species_taxid": 2479048, "relation_to_type": "type", "validated": true, "ani": 77.7091, "matched_fragments": 245, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=DHOF10", "accession": "GCA_004123295.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 77.0218, "matched_fragments": 217, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=CGMCC 1.13007", "accession": "GCA_014640355.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 77.0111, "matched_fragments": 212, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracidobacterium acidisoli", "strain": "strain=4G-K13", "accession": "GCA_003428625.2", "taxid": 2303751, "species_taxid": 2303751, "relation_to_type": "type", "validated": true, "ani": 76.7882, "matched_fragments": 183, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.07, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018268775.1", "gtdb_species": "s__Edaphobacter sp018268775", "ani": 100.0, "matched_fragments": 1262, "total_fragments": 1273, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Edaphobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_018268895.1", "gtdb_species": "s__Edaphobacter sp018268895", "ani": 84.9203, "matched_fragments": 1035, "total_fragments": 1273, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Edaphobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000745965.1", "gtdb_species": "s__Edaphobacter aggregans", "ani": 79.9893, "matched_fragments": 637, "total_fragments": 1273, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Edaphobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018449715.1", "gtdb_species": "s__Edaphobacter sp018449715", "ani": 79.4389, "matched_fragments": 542, "total_fragments": 1273, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Edaphobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004217555.1", "gtdb_species": "s__Edaphobacter modestus", "ani": 79.2529, "matched_fragments": 489, "total_fragments": 1273, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Edaphobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000421065.1", "gtdb_species": "s__Edaphobacter sp000421065", "ani": 79.2054, "matched_fragments": 499, "total_fragments": 1273, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Edaphobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014274685.1", "gtdb_species": "s__Edaphobacter sp014274685", "ani": 78.585, "matched_fragments": 396, "total_fragments": 1273, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Edaphobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900188085.1", "gtdb_species": "s__Granulicella_C rosea", "ani": 78.0911, "matched_fragments": 338, "total_fragments": 1273, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Granulicella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003131315.1", "gtdb_species": "s__Bog-209 sp003131315", "ani": 76.0546, "matched_fragments": 64, "total_fragments": 1273, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__Bog-209", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Acidobacteriota", "c__Terriglobia", "o__Terriglobales", "f__Acidobacteriaceae", "g__Edaphobacter", "s__Edaphobacter sp018268775" ], "_genome_taxon": [ "Acidobacteriota", "bacterium", "d__Bacteria", "p__Acidobacteriota", "c__Terriglobia", "o__Terriglobales", "f__Acidobacteriaceae", "g__Edaphobacter", "s__Edaphobacter sp018268775", "Bacteria", "Acidobacteriota", "Terriglobia", "Terriglobales", "Acidobacteriaceae", "Edaphobacter", "Edaphobacter", "sp018268775" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }