{
    "type": "genome",
    "identifier": "GCA_018295985.1",
    "organism": "Dolichospermum sp. DET66",
    "title": "Dolichospermum sp. DET66",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Oregon State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018295985.1",
        "bioproject": "PRJNA523639",
        "biosample": "SAMN13921472",
        "wgs_master": "JABWAG000000000.1",
        "refseq_category": "na",
        "taxid": "2704415",
        "species_taxid": "2704415",
        "organism_name": "Dolichospermum sp. DET66",
        "infraspecific_name": "",
        "isolate": "DET66",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/06",
        "asm_name": "ASM1829598v1",
        "submitter": "Oregon State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/295/985/GCA_018295985.1_ASM1829598v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-06",
    "dateModified": "2021-05-06",
    "datePublished": "2021-05-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dolichospermum sp. DET66"
        ],
        "sample_taxid": [
            "2704415"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Blowout Creek arm Detroit Reservoir, Oregon"
        ],
        "sample_host_location_id": [],
        "data_size": "1.685 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "6113795",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "5835936",
        "N50 (bp)": "5835936",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.8",
        "Number of CDSs": "5398",
        "Average Protein Length": "295.2",
        "Coding Ratio (%)": "78.2",
        "Number of rRNAs": "15",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Anabaena cylindrica",
                "strain": "strain=NIES-19",
                "accession": "GCA_002367955.1",
                "taxid": 1165,
                "species_taxid": 1165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7001,
                "matched_fragments": 1021,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anabaena cylindrica",
                "strain": "strain=PCC 7122",
                "accession": "GCA_000317695.1",
                "taxid": 1165,
                "species_taxid": 1165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6467,
                "matched_fragments": 1030,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nostoc punctiforme",
                "strain": "strain=ATCC 29133; PCC 73102",
                "accession": "GCA_000020025.1",
                "taxid": 272131,
                "species_taxid": 272131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3738,
                "matched_fragments": 495,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nostoc favosum",
                "strain": "strain=CHAB 5714",
                "accession": "GCA_020829495.1",
                "taxid": 2907819,
                "species_taxid": 2907819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3301,
                "matched_fragments": 513,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cylindrospermopsis raciborskii",
                "strain": "strain=Cr2010",
                "accession": "GCA_003367075.2",
                "taxid": 77022,
                "species_taxid": 77022,
                "relation_to_type": "reftype",
                "validated": true,
                "ani": 77.1503,
                "matched_fragments": 272,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Scytonema hofmannii",
                "strain": "strain=PCC 7110",
                "accession": "GCA_000346485.2",
                "taxid": 34078,
                "species_taxid": 34078,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5503,
                "matched_fragments": 295,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorogloeopsis fritschii",
                "strain": "strain=PCC 6912",
                "accession": "GCA_003990575.1",
                "taxid": 1124,
                "species_taxid": 1124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2979,
                "matched_fragments": 287,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorogloeopsis fritschii",
                "strain": "strain=PCC 6912",
                "accession": "GCA_000317285.1",
                "taxid": 1124,
                "species_taxid": 1124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2862,
                "matched_fragments": 293,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fischerella muscicola",
                "strain": "strain=PCC 7414",
                "accession": "GCA_000317205.1",
                "taxid": 92938,
                "species_taxid": 92938,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2148,
                "matched_fragments": 306,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Iningainema tapete",
                "strain": "strain=BLCC-T55",
                "accession": "GCA_014698965.1",
                "taxid": 2806730,
                "species_taxid": 2806730,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2136,
                "matched_fragments": 317,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Calothrix elsteri",
                "strain": "strain=CCALA 953",
                "accession": "GCA_002289455.1",
                "taxid": 1247191,
                "species_taxid": 1247191,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9818,
                "matched_fragments": 236,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mastigocoleus testarum",
                "strain": "strain=BC008",
                "accession": "GCA_001456025.1",
                "taxid": 996925,
                "species_taxid": 996925,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8892,
                "matched_fragments": 245,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planktothrix tepida",
                "strain": "strain=PCC9214",
                "accession": "GCA_904830955.1",
                "taxid": 1678309,
                "species_taxid": 1678309,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8777,
                "matched_fragments": 142,
                "total_fragments": 2037,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_017355425.1",
                "gtdb_species": "s__Dolichospermum sp017355425",
                "ani": 99.9983,
                "matched_fragments": 2009,
                "total_fragments": 2037,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dolichospermum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_012516395.1",
                "gtdb_species": "s__Dolichospermum sp000312705",
                "ani": 88.2528,
                "matched_fragments": 1329,
                "total_fragments": 2037,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dolichospermum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.37",
                "min_intra_species_ani": "95.92",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_009712035.1",
                "gtdb_species": "s__Dolichospermum sp009712035",
                "ani": 87.8107,
                "matched_fragments": 1267,
                "total_fragments": 2037,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dolichospermum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001277295.1",
                "gtdb_species": "s__Dolichospermum sp001277295",
                "ani": 87.7017,
                "matched_fragments": 1375,
                "total_fragments": 2037,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dolichospermum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.95",
                "min_intra_species_ani": "95.52",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_903848645.1",
                "gtdb_species": "s__Dolichospermum sp903848645",
                "ani": 87.4033,
                "matched_fragments": 1241,
                "total_fragments": 2037,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dolichospermum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009711935.1",
                "gtdb_species": "s__Dolichospermum sp009711935",
                "ani": 87.2447,
                "matched_fragments": 1275,
                "total_fragments": 2037,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dolichospermum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002368115.1",
                "gtdb_species": "s__Dolichospermum compactum",
                "ani": 87.2211,
                "matched_fragments": 1295,
                "total_fragments": 2037,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dolichospermum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014698755.1",
                "gtdb_species": "s__Dolichospermum flosaquae",
                "ani": 85.7552,
                "matched_fragments": 1152,
                "total_fragments": 2037,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dolichospermum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "97.73",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_009711975.1",
                "gtdb_species": "s__Dolichospermum sp009711975",
                "ani": 85.4699,
                "matched_fragments": 1228,
                "total_fragments": 2037,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dolichospermum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.17",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000426925.1",
                "gtdb_species": "s__Dolichospermum circinale",
                "ani": 84.382,
                "matched_fragments": 1136,
                "total_fragments": 2037,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dolichospermum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.89",
                "min_intra_species_ani": "95.31",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_011769525.1",
                "gtdb_species": "s__Aulosira sp011769525",
                "ani": 77.3171,
                "matched_fragments": 464,
                "total_fragments": 2037,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Aulosira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018993265.1",
                "gtdb_species": "s__Nostoc_B sp018993265",
                "ani": 77.0878,
                "matched_fragments": 496,
                "total_fragments": 2037,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 1.217,
        "growth_tmp": 20.555,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4446861.4,
        "gc_content": 37.4,
        "coding_genes": null,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Nostocaceae",
        "g__Dolichospermum",
        "s__Dolichospermum sp017355425"
    ],
    "_genome_taxon": [
        "Dolichospermum",
        "sp.",
        "DET66",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Nostocaceae",
        "g__Dolichospermum",
        "s__Dolichospermum sp017355425",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "Cyanobacteriales",
        "Nostocaceae",
        "Dolichospermum",
        "Dolichospermum",
        "sp017355425"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}