{ "type": "genome", "identifier": "GCA_018333785.1", "organism": "Methylomicrobium sp.", "title": "Methylomicrobium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Utah", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018333785.1", "bioproject": "PRJNA672823", "biosample": "SAMN18877753", "wgs_master": "JAGXSU000000000.1", "refseq_category": "na", "taxid": "2303549", "species_taxid": "2303549", "organism_name": "Methylomicrobium sp.", "infraspecific_name": "", "isolate": "CROMO_BS_115_2", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/10", "asm_name": "ASM1833378v1", "submitter": "University of Utah", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/333/785/GCA_018333785.1_ASM1833378v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-10", "dateModified": "2021-05-10", "datePublished": "2021-05-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylomicrobium sp." ], "sample_taxid": [ "2303549" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:California" ], "sample_host_location_id": [], "data_size": "1.438 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5010955", "Number of Sequences": "201", "Longest Sequences (bp)": "155528", "N50 (bp)": "39383", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.7", "Number of CDSs": "4380", "Average Protein Length": "312.6", "Coding Ratio (%)": "82.0", "Number of rRNAs": "2", "Number of tRNAs": "38", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylicorpusculum oleiharenae", "strain": "strain=XLMV4", "accession": "GCA_009828925.2", "taxid": 1338687, "species_taxid": 1338687, "relation_to_type": "type", "validated": true, "ani": 92.9704, "matched_fragments": 1267, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomicrobium lacus", "strain": "strain=LW14", "accession": "GCA_000527095.1", "taxid": 136992, "species_taxid": 136992, "relation_to_type": "type", "validated": true, "ani": 76.8136, "matched_fragments": 66, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacter marinus", "strain": "strain=A45", "accession": "GCA_000383855.1", "taxid": 34058, 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true, "ani": 75.7641, "matched_fragments": 81, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018333785.1", "gtdb_species": "s__Methylicorpusculum sp018333785", "ani": 100.0, "matched_fragments": 1568, "total_fragments": 1576, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylicorpusculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009828925.1", "gtdb_species": "s__Methylicorpusculum oleiharenae", "ani": 92.9946, "matched_fragments": 1228, "total_fragments": 1576, "gtdb_taxonomy": 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